| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4170893 = | 370 (0.700) | 18 (0.040) | 9/90 | NT | 5.0% | intergenic (+40/‑280) | rplL/rpoB | 50S ribosomal subunit protein L7/L12/RNA polymerase, beta subunit |
| ? | CP009273 | 4170919 = | 384 (0.910) | intergenic (+66/‑254) | rplL/rpoB | 50S ribosomal subunit protein L7/L12/RNA polymerase, beta subunit | |||||
Only 100 of 676 total aligned reads displayed.
AGCTGGCGCTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGA > CP009273/4170826‑4170960 | caagcattgaaaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaag < 1:9221020‑M1/1‑1 (MQ=255)caagcattgaaaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaag < 1:21742247‑M1/1‑1 (MQ=255)caagcattgaaaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaag < 1:42515064‑M1/1‑1 (MQ=255) gCTGGCGCTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATg > 1:15107457/1‑67 (MQ=255) gCTGGCGCTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTCAGAAAACAGGCTGATg > 1:42250606/1‑67 (MQ=255) aagcattgaaaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaagg > 1:15447696‑M1/67‑68 (MQ=255) aagcattgaaaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaagg > 1:35504736‑M1/67‑68 (MQ=255) cTGGCGCTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATg > 1:22778484/1‑66 (MQ=255) agcattgaaaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaaGGc > 1:30267184‑M1/66‑68 (MQ=255) tGGCGCTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGc < 1:40379489/67‑1 (MQ=255) tGGCGCTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGc < 1:19566735/67‑1 (MQ=255) gcattgaaaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaag < 1:28351034‑M1/1‑1 (MQ=255) tgaaaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaaGGCTGGTg < 1:32482773‑M1/8‑1 (MQ=255) gaaaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaaGGCTGGTGa > 1:2499579‑M1/60‑68 (MQ=255) tgaagttgaagtTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGAc < 1:24190379/68‑1 (MQ=255) aaaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaaGGCTGGTg < 1:42075091‑M1/8‑1 (MQ=255) gaagttgaagttAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACt < 1:1003510/68‑1 (MQ=255) aaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaaGGCTGGTGAc > 1:10639925‑M1/58‑67 (MQ=255) aaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaaGGCTGGTGAc > 1:13584869‑M1/58‑67 (MQ=255) aaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaaGGCTGGTGACt > 1:7592201‑M1/58‑68 (MQ=255) aaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaaGGCTGGTGACt < 1:32175916‑M1/11‑1 (MQ=255) aaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaaGGCTGGTGACt < 1:14539354‑M1/11‑1 (MQ=255) aaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaaGGCTGGTGACt > 1:18109656‑M1/58‑68 (MQ=255) agttgaagttAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACtt < 1:25789446/67‑1 (MQ=255) agttgaagttAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACtt < 1:37092235/67‑1 (MQ=255) agttgaagttAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACtt < 1:15881727/67‑1 (MQ=255) agttgaagttAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACtt < 1:14851542/67‑1 (MQ=255) aaTAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACtt < 1:26794774/56‑1 (MQ=255) ctAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGc < 1:29382002/67‑1 (MQ=255) aTAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAg > 1:8382863/1‑67 (MQ=255) aTAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGc < 1:34409735/68‑1 (MQ=255) aTAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGc < 1:28676882/68‑1 (MQ=255) aTAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGc < 1:3848956/68‑1 (MQ=255) aTAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGc < 1:2460062/68‑1 (MQ=255) tacgCCAACCCTTCCGGTTGCAGCCTGAGAAACCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGcc < 1:17206193/65‑1 (MQ=255) tAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGcc < 1:29838831/68‑1 (MQ=255) tAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGcc < 1:31331834/68‑1 (MQ=255) tAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGcc < 1:31741202/68‑1 (MQ=255) tAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGcc < 1:13091084/68‑1 (MQ=255) tAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGcc < 1:36626444/68‑1 (MQ=255) aaGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCt > 1:460268/1‑68 (MQ=255) ccAACCCTTCCGGTTGCAGCCTTAGAAATCAAGCTGATGGCTGGTGACTTTTAAGTCACCAGCCtttt > 1:18585498/1‑68 (MQ=255) ccAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtttt > 1:22531653/1‑68 (MQ=255) ccAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtttt > 1:32761557/1‑68 (MQ=255) aCCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc < 1:25380775/68‑1 (MQ=255) aCCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc < 1:7116514/68‑1 (MQ=255) cccTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCCCCAGCCTTTTTgc > 1:10379741/1‑67 (MQ=255) ccTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgcgc < 1:33771299/68‑1 (MQ=255) ccTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc > 1:39502595/1‑66 (MQ=255) tCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGt < 1:27935296/68‑1 (MQ=255) ccGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTa < 1:10885609/68‑1 (MQ=255) ccGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTa < 1:12332802/68‑1 (MQ=255) ccGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTa < 1:34975384/68‑1 (MQ=255) ccGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTa < 1:39693745/68‑1 (MQ=255) ccGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGGGACTTTTTAGTCACCAGCCTTTTTGCGCTGTa < 1:17779165/68‑1 (MQ=255) ggTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAg > 1:13325183/1‑68 (MQ=255) ggTTGCAGCCTGAGAAATCAGGCTGATCGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAg > 1:43187804/1‑68 (MQ=255) ttGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgc > 1:37768103/1‑68 (MQ=255) ttGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgc > 1:30517675/1‑68 (MQ=255) tGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgcg < 1:17462446/68‑1 (MQ=255) tGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgcg < 1:40641525/68‑1 (MQ=255) tGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgcg < 1:33352888/68‑1 (MQ=255) tGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgcg < 1:27239956/68‑1 (MQ=255) tGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgc > 1:2767234/1‑67 (MQ=255) aGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGcc < 1:21933725/67‑1 (MQ=255) ccTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGt > 1:12928459/1‑68 (MQ=255) ccTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGt > 1:3902024/1‑68 (MQ=255) ccTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCA‑CAGCCTTTTTGCGCTGTAAGGCGCCAGTa > 1:38757968/1‑68 (MQ=255) cgccttacagcgcaaaaaGGCTGGTGACTTTTTAGTCACCAGCCGTTTTGCGCTGTAAGGCGCCAGTa < 1:5455660‑M1/50‑1 (MQ=255) agaAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCATTAGCg > 1:23164773/1‑68 (MQ=255) gaAATCAGGCTGATGGCTGGTGACTTTTTAGTCATCAGCCTTTTTGCGCGGTAAGGCGCCAGTAGCgg > 1:19038024/1‑67 (MQ=255) tacagcgcaaaaaGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGtt < 1:12113489‑M1/55‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGttt < 1:20576144/68‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:14193097/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:43442336/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:1691202/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:37995063/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:25842825/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:36093159/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:20182485/66‑1 (MQ=255) aTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTc < 1:38308148/68‑1 (MQ=255) ggCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTcac > 1:9709840/1‑66 (MQ=255) atGATGGCTTGTGACTTTTTAGTGACCAGACTTTTTGCGGTGTTAGGCGGCAGTAGCGTTTCACACt < 1:1166127/66‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTTAGGCGCCAGTAGCGTTTCACACTGt < 1:41364211/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTg < 1:23339784/67‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:34177281/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:30866813/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:6442454/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGtt < 1:409532/68‑1 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTg < 1:40061832‑M1/67‑1 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTg < 1:13791986‑M1/67‑1 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTg < 1:29031326‑M1/67‑1 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTg < 1:5896289‑M1/67‑1 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTg < 1:23892388‑M1/67‑1 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTg < 1:15643524‑M1/67‑1 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:6164734‑M1/1‑68 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:8162129‑M1/1‑68 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:7961785‑M1/1‑68 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:21101395‑M1/1‑68 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:34536334‑M1/1‑68 (MQ=255) | AGCTGGCGCTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGA > CP009273/4170826‑4170960 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |