| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4170893 = | 370 (0.700) | 18 (0.040) | 9/90 | NT | 5.0% | intergenic (+40/‑280) | rplL/rpoB | 50S ribosomal subunit protein L7/L12/RNA polymerase, beta subunit |
| ? | CP009273 | 4170919 = | 384 (0.910) | intergenic (+66/‑254) | rplL/rpoB | 50S ribosomal subunit protein L7/L12/RNA polymerase, beta subunit | |||||
Only 100 of 672 total aligned reads displayed.
AAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGT > CP009273/4170852‑4170986 | aaacagtgtgaaacgctactggcgccttacagcgcaaaaaggctggtgactaaaaagtcaccagcctt < 1:33181401‑M2/2‑1 (MQ=255) ccAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtttt > 1:22531653/1‑68 (MQ=255) aCCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc < 1:25380775/68‑1 (MQ=255) aCCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc < 1:29949998/68‑1 (MQ=255) aCCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc < 1:25817464/68‑1 (MQ=255) ccTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgcgc < 1:42446433/68‑1 (MQ=255) ccTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc > 1:7392218/1‑66 (MQ=255) ccTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc > 1:34420500/1‑66 (MQ=255) ccTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc > 1:30722779/1‑66 (MQ=255) cTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCt < 1:6421922/68‑1 (MQ=255) gaaacgctactggcgccttacagcgcaaaaaggctggtgactaaaaagtcaccagccTTTTTGCGCt < 1:42816005‑M2/10‑1 (MQ=255) tCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGt < 1:27935296/68‑1 (MQ=255) tCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTAAGTCACCAGCCTTTTTGCGCTGt < 1:5955580/68‑1 (MQ=255) ccGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTa < 1:24074878/68‑1 (MQ=255) ccGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTa < 1:21127092/68‑1 (MQ=255) ccGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTa < 1:42086402/68‑1 (MQ=255) ccGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTa < 1:10885609/68‑1 (MQ=255) accgctactggcgccttacagcgcaaaaagcctggtgactaaaaagtcaccagccTTTTTGCGCTGTa < 1:34037228‑M2/13‑1 (MQ=255) acgctactggcgccttacagcgcaaaaaGGCTGGTGACTTTTTAGTCACCAGCCGTTTTGCGCTGTaa < 1:3631042‑M1/40‑1 (MQ=255) ggTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAg > 1:2180099/1‑68 (MQ=255) ggTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAg > 1:5668641/1‑68 (MQ=255) gctactggcgccttacagcgcaaaaaGGCTGGTGACTTTTTAGTCACCAGCCGTTTTGCGCTGTAAg < 1:27758458‑M1/41‑1 (MQ=255) gTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAg > 1:826381/1‑67 (MQ=255) ttGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgc > 1:30517675/1‑68 (MQ=255) ttGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgc > 1:17281637/1‑68 (MQ=255) ttGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgc > 1:14063327/1‑68 (MQ=255) tGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgcg < 1:19863427/68‑1 (MQ=255) tGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgcg < 1:31220997/68‑1 (MQ=255) gCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgcg > 1:39533999/1‑67 (MQ=255) ggcgccttacagcgcaaaaaGGCTGGTGGCTTTTTAGTCGCCAGGCTTTTTGCGCTGTAAGGCGCCAg < 1:39723240‑M1/48‑1 (MQ=255) ccTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGt > 1:3837923/1‑68 (MQ=255) cgccttacagcgcaaaaaGGCTGGTGACTTTTTAGTCACCAGCCGTTTTGCGCTGTAAGGCGCCAGTa < 1:5455660‑M1/50‑1 (MQ=255) cTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTa < 1:27462003/68‑1 (MQ=255) aaaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGtt > 1:31702431/1‑68 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGttt < 1:10254328/68‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:18519327/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:1691202/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:36918810/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:38881481/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:12722392/66‑1 (MQ=255) tCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTc > 1:9565769/1‑67 (MQ=255) cAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTcac > 1:10112842/1‑68 (MQ=255) ggCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTcac > 1:38141279/1‑66 (MQ=255) gCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTcac > 1:12245004/1‑65 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:17987144/67‑1 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:13599928/67‑1 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:4022922/67‑1 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:35145285/67‑1 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:7664946/67‑1 (MQ=255) cTGAGGGCGGGTGACTTTTTAGGCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:33754521/67‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTg < 1:1574561/67‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTg < 1:15355392/67‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTg < 1:40836016/67‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:19466445/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:13001401/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:13213150/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:32805241/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:32427577/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:32095310/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:20851987/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:14471236/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:6632056/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:43327276/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTGGCGTTTCACACTGtt < 1:23489447/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACtttt < 1:43622917/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGtt < 1:24543655/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGtt < 1:39998958/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGtt < 1:34584732/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGtt < 1:14671084/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGtt < 1:11644709/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGtt < 1:23149529/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGtt < 1:15648816/68‑1 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTg < 1:29031326‑M1/67‑1 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:37433301‑M1/1‑68 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:2693819‑M1/1‑68 (MQ=255) TGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGactact > 1:8597403‑M1/1‑67 (MQ=255) TGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGactact < 1:28334351‑M1/67‑1 (MQ=255) TGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGactact > 1:11896792‑M1/1‑67 (MQ=255) TGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGactact > 1:29499706‑M1/1‑67 (MQ=255) ACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGactact < 1:35885970‑M1/65‑1 (MQ=255) TTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCtgt > 1:5078938‑M1/1‑68 (MQ=255) TTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCtgt > 1:22132682‑M1/1‑68 (MQ=255) tttAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGc < 1:41176397/68‑1 (MQ=255) tttAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGc < 1:4139539/68‑1 (MQ=255) ttAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGcc < 1:20422963/68‑1 (MQ=255) tAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCt > 1:2637978/1‑68 (MQ=255) agtcaccagccTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCtt < 1:15072153‑M2/57‑1 (MQ=255) agtcaccagccTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCtt > 1:37771998‑M2/12‑68 (MQ=255) agtcaccagccTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCtt < 1:23293235‑M2/57‑1 (MQ=255) gtcaccagccTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCtt > 1:2861693‑M2/11‑67 (MQ=255) gtcaccagccTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCtt > 1:10639925‑M2/11‑67 (MQ=255) tcaccagccTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTc > 1:2499579‑M2/10‑68 (MQ=255) caccagccTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCttt < 1:13384199‑M2/58‑1 (MQ=255) ccagccTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAAt > 1:802835‑M2/7‑68 (MQ=255) gccTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCt > 1:30267184‑M2/4‑68 (MQ=255) cTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGc < 1:39318178‑M2/64‑1 (MQ=255) cTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGc < 1:38597820‑M2/64‑1 (MQ=255) cTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTg < 1:17573768‑M2/67‑1 (MQ=255) cTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTg < 1:18878865‑M2/67‑1 (MQ=255) cTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTg < 1:22727813‑M2/67‑1 (MQ=255) | AAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGT > CP009273/4170852‑4170986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |