| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360070 = | 420 (0.800) | 1446 (3.660) +CTGATCAGTGAATT |
27/84 | NT | 81.4% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 464 (0.880) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
Only 100 of 2148 total aligned reads displayed.
CCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCC > CP009273/360003‑360136 | ccAGAGGCACTTCACGGCGTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgat < 1:5756541/68‑1 (MQ=255) gagGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgatgat > 1:25490440/1‑68 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:9486128/1‑68 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:3428804/1‑68 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:17576656/1‑68 (MQ=255) aCTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGc < 1:2307730/67‑1 (MQ=255) cACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCa > 1:38811673/1‑68 (MQ=255) gcctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa > 1:24364818‑M1/55‑68 (MQ=255) gcctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa < 1:30066428‑M1/14‑1 (MQ=255) gcctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa < 1:13724812‑M1/14‑1 (MQ=255) gcctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa > 1:10268843‑M1/55‑68 (MQ=255) gcctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa > 1:1226323‑M1/55‑68 (MQ=255) cctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa < 1:32637137‑M1/14‑1 (MQ=255) cctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa < 1:3916251‑M1/14‑1 (MQ=255) ctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAAc > 1:31144484‑M1/53‑68 (MQ=255) tacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACa > 1:38091985‑M1/52‑68 (MQ=255) tacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACa > 1:30433634‑M1/52‑68 (MQ=255) tacacggatattatcgtgagtatgcgtcatcgccattaattcactgatcagTGATAAGCTTTCAAACa > 1:27869892‑M1/52‑68 (MQ=255) gCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACa > 1:12875452/1‑68 (MQ=255) gCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACa < 1:4519472/68‑1 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagt > 1:19229073‑M1/50‑50 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:32018195‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:840918‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:28302056‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:21946380‑M1/50‑68 (MQ=255) ccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATga < 1:16831258‑M1/20‑1 (MQ=255) ccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATga < 1:7597332‑M1/20‑1 (MQ=255) ccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATga < 1:26741751‑M1/20‑1 (MQ=255) ggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATgaga > 1:42215273‑M1/47‑68 (MQ=255) ccAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATgaga > 1:24775381/1‑68 (MQ=255) cAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATgaga < 1:40411382/67‑1 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGaa > 1:4829829‑M1/45‑67 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGaa > 1:26325046‑M1/45‑67 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGaa > 1:40910094‑M1/45‑67 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGaa > 1:43504211‑M1/45‑67 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:8847854‑M1/24‑1 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:9682322‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt > 1:20774903‑M1/44‑68 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:9183601‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:19599151‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt > 1:6690582‑M1/44‑67 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:11869582‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:8058606‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt > 1:18942909‑M1/44‑67 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:13183574‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:21508317‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:3641093‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:42652363‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:26060386‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:37648026‑M1/24‑1 (MQ=255) gCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAAt > 1:33513364/1‑67 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:7237031‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:18720435‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:17214033‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:14090995‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:37235218‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:31516186‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:3977046‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:29032562‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:27472796‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:23523454‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTATCAAACATGAGAAtt < 1:41783328‑M1/25‑1 (MQ=255) ttatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATTcc > 1:35916770‑M1/42‑68 (MQ=255) tatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:2228100‑M1/28‑2 (MQ=255) gCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGATTTCCg > 1:28607930/1‑68 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAgaattaca < 1:35043131‑M1/28‑4 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat > 1:5354225‑M1/40‑66 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat > 1:10653125‑M1/40‑66 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:41520561‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:3946514‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:16422144‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:11561489‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:11259304‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:27026892‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:10003030‑M1/28‑2 (MQ=255) atcgtgaggatgagtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:24012149‑M1/28‑2 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTTTCAAACATGAGTAttccat < 1:4298816‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:15058189‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:6295845‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:36825686‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:21134389‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:17868233‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:29748139‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:3080373‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:34707565‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:33989827‑M1/29‑3 (MQ=255) tcgtgaggatgcgacatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:29371367‑M1/29‑3 (MQ=255) aCCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATcc < 1:25084068/68‑1 (MQ=255) aTCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCa > 1:35600466/1‑68 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt < 1:15927355/68‑1 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:2000361/1‑68 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt < 1:18305115/68‑1 (MQ=255) ccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAg < 1:32268203/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:32968106/68‑1 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa > 1:14536240/1‑68 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa > 1:15553506/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:38460408/1‑68 (MQ=255) cGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTg > 1:22733078/1‑67 (MQ=255) agtgataaGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:41198294‑M1/3‑29 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:20396628‑M1/2‑28 (MQ=255) | CCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCC > CP009273/360003‑360136 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |