| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360070 = | 420 (0.800) | 1446 (3.660) +CTGATCAGTGAATT |
27/84 | NT | 81.4% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 464 (0.880) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
Only 100 of 1972 total aligned reads displayed.
GCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCAT > CP009273/561498‑561631 | gccgcAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCAtt > 1:9064782/1‑67 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAAt < 1:36239985/65‑1 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACa > 1:17833994/1‑68 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACa > 1:7423272/1‑68 (MQ=255) gttgtGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAAt < 1:27537489/68‑1 (MQ=255) gttgtGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAAt > 1:42644306/1‑68 (MQ=255) gAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCa > 1:21359952/1‑67 (MQ=255) gAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCa > 1:25039694/1‑67 (MQ=255) gcctaccCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa > 1:10268843‑M2/4‑40 (MQ=255) gcctaccCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa > 1:39831537‑M2/4‑40 (MQ=255) gcctaccCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa > 1:14282948‑M2/4‑40 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:24838447/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:5778581/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:6244507/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:774696/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:11546537/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:34862772/1‑68 (MQ=255) cctacCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa < 1:27949643‑M2/65‑29 (MQ=255) cctacCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa < 1:29222223‑M2/65‑29 (MQ=255) ctaCCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaa > 1:22852352‑M2/2‑38 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCTATTaattcactgatcagtgataagctgtcaaacatg > 1:18721113‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:3127274‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg < 1:19058754‑M2/68‑34 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:33250150‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:840918‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:23637404‑M2/1‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:30950064‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:35395795‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:35756980‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:37908961‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:41811334‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:23287974‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:9661773‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:17572253‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:1466254‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:13511617‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTg > 1:37461010/1‑67 (MQ=255) cGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgag < 1:446103‑M2/68‑36 (MQ=255) ggATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgaga > 1:42215273‑M2/1‑32 (MQ=255) ggATATTATCGTGAGGATGCGTCATCGCCATTaattcacagatcagtgataagctgtcaaacatgaga > 1:40848614‑M2/1‑32 (MQ=255) atatTATCGTGAGGATGCGTCATCGCTATTaattcactgatcagtgataagctgtcaaacatgagaa > 1:33950794‑M2/1‑30 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:40437401‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:34383720‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:16877012‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:37076784‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:39518018‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:19404396‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:1386457‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:8738955‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:21781687‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaa > 1:700952‑M2/1‑30 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaa > 1:22076284‑M2/1‑30 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcactgataagctgtcaaacatgagaat < 1:6603619‑M2/68‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:29576463‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat > 1:38764010‑M2/1‑29 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:18315309‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:11869582‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:31785658‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat > 1:10749812‑M2/1‑29 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattc < 1:20915644‑M2/68‑41 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattc > 1:16567963‑M2/1‑28 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaatt < 1:15609920‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaatt < 1:12208395‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaatt < 1:20528401‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaatt < 1:26327481‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGt > 1:19830911/1‑67 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGt > 1:3030303/1‑67 (MQ=255) ttatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcc > 1:32804919‑M2/1‑27 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:10003030‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:9469586‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:24372981‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:11259304‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:25432764‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:5292604‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:20182685‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:41228772‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:3666282‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:32516349‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:22536180‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAt > 1:172561/1‑68 (MQ=255) atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAt > 1:29890688/1‑68 (MQ=255) atCGTGAGGATGAGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:24012149‑M2/67‑43 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctttcaaacatgagtattccat < 1:4298816‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:27265937‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:38263933‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:3217910‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:8117978‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAtt > 1:43386862/1‑68 (MQ=255) tCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAtt > 1:16044660/1‑68 (MQ=255) tCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACAAATTTCAGCCAGTGCCTCGTCCAtt > 1:41576887/1‑68 (MQ=255) cGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAgtt > 1:3069646/1‑68 (MQ=255) tGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttttt > 1:4853481/1‑68 (MQ=255) tGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttttt > 1:12761635/1‑68 (MQ=255) aTGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGa < 1:25965852/67‑1 (MQ=255) aTGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGAt > 1:39167623/1‑68 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:13069674/67‑1 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:1508785/67‑1 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:28461404/67‑1 (MQ=255) ttGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCa < 1:28839190/68‑1 (MQ=255) tGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCa > 1:26812335/1‑67 (MQ=255) | GCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCAT > CP009273/561498‑561631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |