| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1023817 = | NA (NA) | 7 (0.020) | 5/84 | NT | NA | intergenic (+2/+43) | yccU/hspQ | putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein |
| ? | CP009273 | 1023851 = | NA (NA) | intergenic (+36/+9) | yccU/hspQ | putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein | |||||
Only 100 of 565 total aligned reads displayed.
GGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGG > CP009273/1023750‑1023884 | gggTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑aaaa > 1:16087458/1‑68 (MQ=255) gatgagctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacaa < 1:25487183‑M1/2‑1 (MQ=255) gatgagctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacaa < 1:36505487‑M1/2‑1 (MQ=255) gatgagctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacaa < 1:30132690‑M1/2‑1 (MQ=255) gatgagctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacaa < 1:5177842‑M1/2‑1 (MQ=255) gatgagctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacaa < 1:33825906‑M1/2‑1 (MQ=255) atgagctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacaaa < 1:4932707‑M1/3‑1 (MQ=255) atgagctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacaaa < 1:13038966‑M1/3‑1 (MQ=255) tgagctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacaaa < 1:32351148‑M1/3‑1 (MQ=255) tAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAAt > 1:37762068/1‑67 (MQ=255) tAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAAt < 1:17293111/67‑1 (MQ=255) gctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacAAATcc < 1:10163674‑M1/6‑1 (MQ=255) gctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacAAATcc < 1:42539673‑M1/6‑1 (MQ=255) aTGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATcccc > 1:2331280/1‑68 (MQ=255) aTGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATcccc > 1:23036402/1‑68 (MQ=255) aTGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATcccc > 1:6902376/1‑68 (MQ=255) aTGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATcccc > 1:31894535/1‑68 (MQ=255) tgtgGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCg > 1:38363736/1‑68 (MQ=255) tgtgGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCg > 1:12580085/1‑68 (MQ=255) ctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacAAATcccc < 1:30955804‑M1/8‑1 (MQ=255) gtggtgATGGATCGCTGCCCGGCTATTGAGCTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCgg > 1:28211847/1‑68 (MQ=255) gtggtgATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCgg > 1:24734760/1‑68 (MQ=255) gtgATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAg > 1:35482450/1‑68 (MQ=255) cgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacAAATCCCCGGaa < 1:41471378‑M1/12‑1 (MQ=255) gcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacAAATCCCCGGAAg < 1:8211692‑M1/13‑1 (MQ=255) gcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacAAATCCCCGGAAg < 1:22088792‑M1/13‑1 (MQ=255) gcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacAAATCCCCGGAAg < 1:1631034‑M1/13‑1 (MQ=255) gcagaccatccgcaaacaactcaaggccccgcgtctgcgtaactaatccctgaacAAATCCCCGGAAg < 1:1165735‑M1/13‑1 (MQ=255) tGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCaa > 1:33051503/1‑68 (MQ=255) tGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCaa > 1:5677476/1‑68 (MQ=255) aTCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCaaaa > 1:36033571/1‑67 (MQ=255) aTCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCaaaa > 1:16959909/1‑67 (MQ=255) cGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCaaaaa > 1:21889573/1‑66 (MQ=255) gCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCt > 1:3951253/1‑68 (MQ=255) cccGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCg > 1:27738080/1‑68 (MQ=255) ccGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCgg > 1:3807937/1‑68 (MQ=255) cGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCggg < 1:9178850/68‑1 (MQ=255) ttGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTg < 1:27384575/68‑1 (MQ=255) ttagaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:28686758/66‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:43408090/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:33583360/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt > 1:35844561/1‑68 (MQ=255) gagaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGAGTTGt > 1:42952869/1‑67 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt > 1:5384904/1‑67 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:29946498/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:16588470/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:40399252/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:5041252/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:22792254/1‑68 (MQ=255) agaTCCCTCCCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:21481337/1‑68 (MQ=255) gaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGCGATTAGTTCa > 1:4115052/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:30511709/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg < 1:7964725/68‑1 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:20827339/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:21254293/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:19387760/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:27067719/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:42070483/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg < 1:7482463/68‑1 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAg < 1:40859652/67‑1 (MQ=255) ccTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGa < 1:25720075/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:34734260/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:15680036/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:20076042/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:20266119/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:11248861/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:37405517/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:10972401/68‑1 (MQ=255) gcctgggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAg < 1:9763674/68‑1 (MQ=255) gcctgggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAg < 1:18332476/68‑1 (MQ=255) cctgggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGTATTTGTTCAGGGATTAGt > 1:894780/1‑68 (MQ=255) cctgggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGt > 1:19529868/1‑68 (MQ=255) cctgggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGt > 1:43647557/1‑68 (MQ=255) ctgggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGtt > 1:18806939/1‑68 (MQ=255) ctgggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGtt > 1:31650969/1‑68 (MQ=255) gggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTAc < 1:2943326/68‑1 (MQ=255) gcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:40694015/1‑68 (MQ=255) gcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:32643557/1‑68 (MQ=255) gcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:24353468/1‑68 (MQ=255) gcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:39860198/1‑68 (MQ=255) gcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:342572/1‑68 (MQ=255) gcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:20514907/1‑68 (MQ=255) cctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:3874861/1‑68 (MQ=255) cctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:6470849/1‑68 (MQ=255) cctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:6186189/1‑68 (MQ=255) cctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:14888970/1‑68 (MQ=255) cctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:13906477/1‑68 (MQ=255) cctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:2368443/1‑68 (MQ=255) cctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:24083519/1‑68 (MQ=255) cctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:26296662/1‑68 (MQ=255) cctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:26793544/1‑68 (MQ=255) tggCCAACT‑AAAAAATCCCCGGAACGCAAAACCCTTCCGGGGATTTGTTCAGGGATTAGTAACGCAGa < 1:39251097/68‑1 (MQ=255) ccAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAcgc > 1:8700886/1‑68 (MQ=255) ccAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAcgc > 1:36949028/1‑68 (MQ=255) ccAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAcgc > 1:10681121/1‑68 (MQ=255) ccAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAcg < 1:40062435/67‑1 (MQ=255) ccctgaacAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAcgcg < 1:14094889‑M1/60‑1 (MQ=255) t‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGc < 1:18055509/68‑1 (MQ=255) t‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGc < 1:11940200/68‑1 (MQ=255) aaaaaTCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCt < 1:22594131/68‑1 (MQ=255) | GGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGG > CP009273/1023750‑1023884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |