| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1023817 = | NA (NA) | 7 (0.020) | 5/84 | NT | NA | intergenic (+2/+43) | yccU/hspQ | putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein |
| ? | CP009273 | 1023851 = | NA (NA) | intergenic (+36/+9) | yccU/hspQ | putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein | |||||
Only 100 of 536 total aligned reads displayed.
TTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCA > CP009273/1023784‑1023918 | ttGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTg < 1:27384575/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:9569618/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:26334219/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:36306365/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:38176680/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:41387117/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:12917054/68‑1 (MQ=255) gagaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt > 1:9301294/1‑67 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt > 1:5384904/1‑67 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:40399252/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:8488958/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:8724056/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:28728918/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:31513324/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:25604709/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:24356458/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:21846475/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:19852636/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:16588470/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGGAGGCAAACACCTTCCGGGGATTTGTTCAgg > 1:2352655/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAACTCCGTCCGGGGATTTGTTCAgg > 1:33712739/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACTGTCCGGGGATTTGTTCAgg > 1:20697346/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:21384076/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:27067719/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg < 1:32183010/68‑1 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:22664917/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:34226536/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:17264310/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:36694992/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:38729826/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:42956770/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:464356/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:7151429/1‑68 (MQ=255) cgcgtctgcgtaactaatccctgaacaaatccccggaaggtttttgccttccggggatttGTTCAggg < 1:14094889‑M2/8‑1 (MQ=255) ccTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGa < 1:37018942/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGACGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:10725618/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:20266119/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:23247074/68‑1 (MQ=255) gcctgggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAg < 1:18332476/68‑1 (MQ=255) cctgggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGt > 1:5678200/1‑68 (MQ=255) cctgggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGt > 1:2993225/1‑68 (MQ=255) cctgggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGGTCAGGGATTAGt > 1:33416763/1‑68 (MQ=255) cctgggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCGTCCGGGGATTTGTTCAGGGATTAGt > 1:5174094/1‑68 (MQ=255) tgcgtaactaatccctgaacaaatccccggaaggtttttgccttccggggatttGTTCAGGGATTAGt < 1:40915122‑M2/14‑1 (MQ=255) ctgggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGtt > 1:31684758/1‑68 (MQ=255) ctgggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGt < 1:30279101/67‑1 (MQ=255) tgggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGtt > 1:18619960/1‑67 (MQ=255) gggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTAc < 1:7687489/68‑1 (MQ=255) gggcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTAc < 1:2943326/68‑1 (MQ=255) gtaactaatccctgaacAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTGAGGGATTTGTTAc < 1:11791742‑M1/51‑1 (MQ=255) gcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:5016100/1‑68 (MQ=255) gcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:39860198/1‑68 (MQ=255) gcctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGAGTAGTTACg > 1:8089474/1‑67 (MQ=255) cctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:14888970/1‑68 (MQ=255) cctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:26793544/1‑68 (MQ=255) cctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:6186189/1‑68 (MQ=255) cctggCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:28019890/1‑68 (MQ=255) ccAAAT‑AAAAAATCCCCGGAAGGCAAGAACCTTCGCGGGATTGGTTCAGGGAGTAGTTGCGCAGAcgc > 1:11423019/1‑68 (MQ=255) ccAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAcgc > 1:42713221/1‑68 (MQ=255) ccAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAcgc > 1:32484098/1‑68 (MQ=255) ccAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAcg < 1:19526955/67‑1 (MQ=255) ccAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAcg < 1:40062435/67‑1 (MQ=255) aT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCgggg < 1:35902872/68‑1 (MQ=255) t‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCgggg > 1:30640518/1‑67 (MQ=255) acAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCgggg < 1:24000588‑M1/63‑1 (MQ=255) aaaaaTCCCCGGAAGGCACAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCt < 1:6419786/68‑1 (MQ=255) aaaaaTCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCt < 1:10975520/68‑1 (MQ=255) AATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGa < 1:41578111‑M1/68‑1 (MQ=255) ATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAg < 1:40640393‑M1/68‑1 (MQ=255) ATCCCCGGAAGGCAAAAACCTTCCGGGGAGTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAg < 1:39138421‑M1/68‑1 (MQ=255) TCCCCGGAAGGCAAAAACCTTGCGGGGATTTGTTCAGGGATTAGTAACGCAGACCCGGGGCCTGGAgt < 1:40734111‑M1/68‑1 (MQ=255) TCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAgt < 1:16100959‑M1/68‑1 (MQ=255) CCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAgttg < 1:35516210‑M1/68‑1 (MQ=255) CCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAgttgt > 1:13515491‑M1/1‑68 (MQ=255) CGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAgttgtt > 1:31880649‑M1/1‑68 (MQ=255) aaaaCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATgg < 1:15103121/68‑1 (MQ=255) aaaCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGt < 1:18863349/68‑1 (MQ=255) aaaCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGt < 1:35113115/68‑1 (MQ=255) aaaCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGt < 1:15613797/68‑1 (MQ=255) aCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATgg > 1:43423191/1‑65 (MQ=255) ccttccggggatttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCt > 1:27693858‑M2/15‑67 (MQ=255) cttccggggatttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTgc < 1:16987616‑M2/55‑1 (MQ=255) ggatttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGc < 1:10163674‑M2/61‑1 (MQ=255) ggatttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGc < 1:42539673‑M2/61‑1 (MQ=255) ggatttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGc < 1:39426486‑M2/61‑1 (MQ=255) ggatttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGc < 1:21014854‑M2/61‑1 (MQ=255) gatttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCt < 1:37957508‑M2/62‑1 (MQ=255) tttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCa < 1:12203144‑M2/64‑1 (MQ=255) tttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCa < 1:34526614‑M2/64‑1 (MQ=255) tttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCa < 1:22981215‑M2/64‑1 (MQ=255) tttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCAt < 1:1763508‑M2/65‑1 (MQ=255) tttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCAt < 1:6892111‑M2/65‑1 (MQ=255) tttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCAt < 1:327299‑M2/65‑1 (MQ=255) ttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATc < 1:37739097‑M2/66‑1 (MQ=255) ttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATc < 1:22124654‑M2/66‑1 (MQ=255) ttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATc < 1:16262314‑M2/66‑1 (MQ=255) ttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATc < 1:25487183‑M2/66‑1 (MQ=255) ttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTCGCGGATGGTCTGCGCCAGCTCATc < 1:20440990‑M2/66‑1 (MQ=255) tGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATcc < 1:24141892‑M2/67‑1 (MQ=255) gTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCa > 1:33088555/1‑68 (MQ=255) | TTGAGATCCCTCGCCTGGGCCTGGCCAAAT‑AAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCA > CP009273/1023784‑1023918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |