| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1958516 = | 416 (0.790) | 21 (0.050) | 9/96 | NT | 6.2% | coding (792/2079 nt) | flhA | putative flagellar export pore protein |
| ? | CP009273 | 1958598 = | 280 (0.620) | coding (710/2079 nt) | flhA | putative flagellar export pore protein | |||||
Only 100 of 653 total aligned reads displayed.
TGAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTAT > CP009273/1958449‑1958583 | tcatggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:20301071‑M1/1‑1 (MQ=255)tcatggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:6798018‑M1/1‑1 (MQ=255)tcatggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:41795943‑M1/1‑1 (MQ=255)tGAAAAGCTGATTCTCCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGAccccc > 1:39088628/1‑68 (MQ=255) gAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGAccccc > 1:5020349/1‑67 (MQ=255) gAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATAGGTGCTGACACGCGTAACGATGAccccc > 1:16073988/1‑67 (MQ=255) catggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:4877835‑M1/1‑1 (MQ=255) catggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:9765047‑M1/1‑1 (MQ=255) atggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacacgc < 1:42085288‑M1/3‑1 (MQ=255) atggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacacgc < 1:38743605‑M1/3‑1 (MQ=255) aaaGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCcgcg < 1:4496598/68‑1 (MQ=255) ggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacacgcg < 1:32718639‑M1/4‑1 (MQ=255) ggtcattaacattgtcggcggggtgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcgg > 1:28869918‑M1/64‑68 (MQ=255) gtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc < 1:26431930‑M1/6‑1 (MQ=255) aGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCgcggc < 1:20555636/68‑1 (MQ=255) tcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc > 1:39349072‑M1/62‑67 (MQ=255) tcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc > 1:30901437‑M1/62‑67 (MQ=255) tcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc > 1:37236450‑M1/62‑67 (MQ=255) gcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc > 1:22797279‑M1/62‑67 (MQ=255) gCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCgcggcg > 1:38162606/1‑68 (MQ=255) tGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGt < 1:10318249/68‑1 (MQ=255) ttCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGa < 1:35816379/68‑1 (MQ=255) cACCATCTGCTCGCCAACATCCTGATCGGTGCTGCCACGCGTAACGATGACCCCCGCGGCGGTAGaaa > 1:33826205/1‑68 (MQ=255) cACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGaaa > 1:8812827/1‑68 (MQ=255) cACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGaaa > 1:5946594/1‑68 (MQ=255) cACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGaaa > 1:5338698/1‑68 (MQ=255) cATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATc > 1:18464162/1‑67 (MQ=255) tCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCAcc > 1:13407767/1‑68 (MQ=255) gCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAgc < 1:33420093/68‑1 (MQ=255) gCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAgc < 1:22172322/68‑1 (MQ=255) gCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAgc > 1:31907694/1‑68 (MQ=255) gCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAgc > 1:29846622/1‑68 (MQ=255) ccAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCAGCGGCGGTAGAAATCACCAGCGCCgg > 1:30338069/1‑68 (MQ=255) aaCATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGag < 1:3416861/68‑2 (MQ=255) ccTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTtgt > 1:11018579/1‑68 (MQ=255) ccTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTtgt > 1:20074690/1‑68 (MQ=255) gagcGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc < 1:36876921/65‑1 (MQ=255) gATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc < 1:2700300/68‑1 (MQ=255) aTCGGTGCTGCCACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc > 1:30623935/1‑67 (MQ=255) aTCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc > 1:40798155/1‑67 (MQ=255) tCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca > 1:10638155/1‑67 (MQ=255) tCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca > 1:17514136/1‑67 (MQ=255) gCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGa > 1:25406734/1‑67 (MQ=255) gCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGa < 1:7440708/67‑1 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCCCCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:29443861/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:31558928/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:31330417/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:32248672/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:7019396/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:6413830/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:16868279/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:9037398/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:23539836/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:9495523/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:16509224/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:23862173/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:27414633/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:15555407/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:27707870/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCg < 1:43086872/68‑1 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAAAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:25075647/1‑67 (MQ=255) atggcatgagcatgggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc < 1:13957177‑M1/48‑1 (MQ=255) acGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGc < 1:23303508/68‑1 (MQ=255) ggcatgagcatgggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCCCCAGACCGTCGcc < 1:29162885‑M1/51‑1 (MQ=255) cgcgTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCg < 1:39920848/66‑1 (MQ=255) cgcgTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGcc < 1:32864070/68‑1 (MQ=255) gTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAAt < 1:34631445/68‑1 (MQ=255) gTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAAt < 1:5402909/68‑1 (MQ=255) gTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAAt < 1:1168433/68‑1 (MQ=255) tAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAAt < 1:36298540/67‑1 (MQ=255) atcGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:24280329/66‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:13061798/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:35004932/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:14636226/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:42741640/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:41132835/68‑1 (MQ=255) agcatgggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:41406558‑M1/56‑1 (MQ=255) catgggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCa < 1:12110098‑M1/59‑1 (MQ=255) aTGACCCCCGCGGCGATAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCaa > 1:17055216/1‑68 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAAt > 1:40581371/1‑68 (MQ=255) gACCCCCGCGGCGGAAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATa > 1:18195940/1‑68 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGCCCGTCGCCAATGGTCAATAGc < 1:42259108/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:24491713/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:8482098/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:1888720/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:19281020/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:4338841/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:12657962/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:40222396/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc > 1:1422879/1‑68 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc > 1:2099441/1‑68 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc > 1:35406644/1‑68 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc > 1:21628825/1‑68 (MQ=255) acaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGGCACCAGACCGTCGCCAATGGTCAATAGCg < 1:21380510‑M1/65‑1 (MQ=255) acaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCg < 1:30057554‑M1/65‑1 (MQ=255) cccGCGGCGGTAGAACTCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGt < 1:12875349/68‑1 (MQ=255) cccGCGGCGGTAGAAATCACCTGCGCCGGAATTTGTGCCACCTGCCCGTAGCCAATGGTCAATCGcct > 1:28115810/1‑66 (MQ=255) cccGCGGCGGTAGAAATCACCAGCGCTGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGt < 1:8022544/68‑1 (MQ=255) cccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGt > 1:37782351/1‑68 (MQ=255) cccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGt < 1:10016509/68‑1 (MQ=255) | TGAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTAT > CP009273/1958449‑1958583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |