New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2499292514 (0.980)33 (0.070) 12/98 NT 6.4% coding (820/1086 nt) ypdF Xaa‑Pro aminopeptidase
?CP009273 = 2499321 518 (1.120)coding (791/1086 nt) ypdF Xaa‑Pro aminopeptidase

Only 100 of 792 total aligned reads displayed.

TGCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGC  >  CP009273/2499226‑2499358
                                                                  |                                                                  
tGCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   <  1:6404415/68‑1 (MQ=255)
 gCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   >  1:31582338/1‑67 (MQ=255)
   cGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGcgcgcg                                                                <  1:9382168/68‑1 (MQ=255)
       aGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCAt                                                            <  1:35796155/68‑1 (MQ=255)
        gCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATc                                                           >  1:38222905/1‑68 (MQ=255)
        gCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATc                                                           >  1:42740468/1‑68 (MQ=255)
         cGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCg                                                          >  1:6734348/1‑68 (MQ=255)
          gTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATc                                                           <  1:3259565/66‑1 (MQ=255)
          gTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATc                                                           <  1:18056257/66‑1 (MQ=255)
          gTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCg                                                          >  1:7542016/1‑67 (MQ=255)
          gTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGt                                                         <  1:27791572/68‑1 (MQ=255)
          gTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGt                                                         <  1:39622009/68‑1 (MQ=255)
          gTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGt                                                         <  1:7839329/68‑1 (MQ=255)
            gACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTc                                                        <  1:23579316/67‑1 (MQ=255)
              ccGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGtgcgctgccagcagg                                                     >  1:18473076‑M1/1‑53 (MQ=255)
               cGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCaa                                                      >  1:37834998/1‑66 (MQ=255)
                  tgtTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACctg                                                  <  1:33610176/67‑1 (MQ=255)
                  tgtTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACctg                                                  <  1:34640036/67‑1 (MQ=255)
                  tgtTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACctg                                                  <  1:9044229/67‑1 (MQ=255)
                   gtTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACct                                                   >  1:31269474/1‑65 (MQ=255)
                     tATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACctgctg                                               >  1:40828307/1‑67 (MQ=255)
                      aTGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGc                                             >  1:41047247/1‑68 (MQ=255)
                        gcccGAGATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:20730676/3‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:19723581/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:14223867/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:16338206/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:41388833/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:32937815/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:22187011/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:2460588/1‑67 (MQ=255)
                         aCCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          >  1:9701629/1‑68 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          <  1:36644058/67‑1 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          >  1:819101/1‑67 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          >  1:11318373/1‑67 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          <  1:28442461/67‑1 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          >  1:26951888/1‑67 (MQ=255)
                              aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                     >  1:31907834‑M2/1‑66 (MQ=255)
                              aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                     >  1:1938909‑M2/1‑66 (MQ=255)
                               aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                     <  1:27308419‑M2/67‑3 (MQ=255)
                               aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                     <  1:10986230‑M2/67‑3 (MQ=255)
                               aTAGGCGCCATACCCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgc                                    >  1:39040547‑M2/1‑65 (MQ=255)
                                tAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgcc                                   >  1:11681333‑M2/1‑64 (MQ=255)
                                 aGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccg                                  <  1:5745311‑M2/68‑6 (MQ=255)
                                 aGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccg                                  <  1:15893885‑M2/68‑6 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                >  1:16815526‑M2/1‑60 (MQ=255)
                                        aTAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcatt                           >  1:35385674‑M2/1‑56 (MQ=255)
                                         tAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcatta                          >  1:5288438‑M2/1‑55 (MQ=255)
                                           aCCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcg                        <  1:8667484/68‑1 (MQ=255)
                                            ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCCCGCCGGGGCGAATcgc                       >  1:21807248/1‑68 (MQ=255)
                                            ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                       >  1:24073146/1‑68 (MQ=255)
                                            ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                       >  1:25576347/1‑68 (MQ=255)
                                            ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                       <  1:18724895/68‑1 (MQ=255)
                                             cTGCTTCTGTAATGCCCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacaga                      >  1:40523653‑M2/1‑51 (MQ=255)
                                             cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                      >  1:26206637/1‑68 (MQ=255)
                                             cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                      >  1:32371272/1‑68 (MQ=255)
                                             cTGCTTCTGTAATAACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacaga                      >  1:37382706‑M2/1‑51 (MQ=255)
                                                 ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgaga                  >  1:30009720/1‑68 (MQ=255)
                                                 ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                   <  1:5028071/67‑1 (MQ=255)
                                                 ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                   <  1:12960353/67‑1 (MQ=255)
                                                  tCTGTAATGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcag                 >  1:36085796‑M1/1‑17 (MQ=255)
                                                  tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                 >  1:8512502/1‑68 (MQ=255)
                                                   cTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAtt                >  1:15547634/1‑68 (MQ=255)
                                                     gTACTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc              <  1:23266022/68‑1 (MQ=255)
                                                     gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc              <  1:17311441/68‑1 (MQ=255)
                                                      tAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAtt                >  1:20266001/1‑65 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgctg            <  1:22420019/68‑1 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:15017141/1‑67 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:15399206/1‑67 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:21431390/1‑67 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:43091422/1‑67 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:7041512/1‑67 (MQ=255)
                                                         tGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatg           >  1:41732201‑M1/1‑10 (MQ=255)
                                                           aCCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:42130950/1‑67 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        >  1:471009‑M1/1‑7 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        >  1:34966340‑M1/1‑7 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        <  1:41902103‑M1/67‑61 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        <  1:13369978‑M1/67‑61 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCTCGCCGGGGCGAATCGCGGAGATTGCTGCGAg        <  1:29516227/67‑1 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCTGAGATTGCTGCGa         >  1:29161220/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:13967992/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:40055359/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:30864305/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:39300539/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:10089022/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:36805660/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:21180066/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:34189981/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAg        <  1:10425525/67‑1 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGc       <  1:30617169/68‑1 (MQ=255)
                                                            cccGGCGCGCGGCATCGGCACCCTGCTGGCAGCGCAcgccgggtcattacagaagcaggttatggcg        >  1:6828980‑M2/1‑36 (MQ=255)
                                                             ccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtgattacagaagcaggttatggcg        >  1:42438394‑M1/1‑6 (MQ=255)
                                                             ccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:25025947/1‑65 (MQ=255)
                                                              cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtg     <  1:36337813/68‑1 (MQ=255)
                                                               ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt    <  1:12362928/68‑1 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   <  1:30388119/67‑1 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCGGCTGGCAGCGCCCGCCGGGGCGAATCGCGGAGATTGCTGCGCGCtgtg   >  1:6062702/1‑67 (MQ=255)
                                                                 cGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactatt  >  1:43589759‑M1/1‑2 (MQ=255)
                                                                 cGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactatt  >  1:38700847‑M1/1‑2 (MQ=255)
                                                                  gtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactatt  <  1:25935911‑M1/67‑67 (MQ=255)
                                                                  gcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   >  1:14696365/1‑66 (MQ=255)
                                                                  |                                                                  
TGCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGC  >  CP009273/2499226‑2499358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.