New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2499292514 (0.980)33 (0.070) 12/98 NT 6.4% coding (820/1086 nt) ypdF Xaa‑Pro aminopeptidase
?CP009273 = 2499321 518 (1.120)coding (791/1086 nt) ypdF Xaa‑Pro aminopeptidase

Only 100 of 648 total aligned reads displayed.

AAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACA  >  CP009273/2499255‑2499387
                                                                  |                                                                  
  aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  <  1:36795861‑M2/67‑3 (MQ=255)
  aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  <  1:3532825‑M2/67‑3 (MQ=255)
  aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  <  1:27308419‑M2/67‑3 (MQ=255)
    aGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccg                                                               <  1:30599667‑M2/68‑6 (MQ=255)
    aGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccg                                                               <  1:39898142‑M2/68‑6 (MQ=255)
       cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             >  1:29733789‑M2/1‑60 (MQ=255)
       cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             >  1:16815526‑M2/1‑60 (MQ=255)
       cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCgggg                                                            <  1:26126948/68‑1 (MQ=255)
       cGCCATAACCTGCTTCTGTAATCACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgg                                                              >  1:42438394‑M2/1‑60 (MQ=255)
          cATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtca                                                          >  1:41732201‑M2/1‑57 (MQ=255)
           aTAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcatt                                                        >  1:12157031‑M2/1‑56 (MQ=255)
           aTAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGaa                                                        >  1:40097667/1‑68 (MQ=255)
               ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    <  1:18724895/68‑1 (MQ=255)
               ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:11134224/1‑68 (MQ=255)
                cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:39607899/1‑68 (MQ=255)
                cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:1163569/1‑68 (MQ=255)
                cTGCTTCTGTAATAACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacaga                                                   >  1:37382706‑M2/1‑51 (MQ=255)
                    ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCTgaga                                               <  1:17704361/68‑1 (MQ=255)
                    ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgaga                                               <  1:5553327/68‑1 (MQ=255)
                    ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                                                <  1:23960596/67‑1 (MQ=255)
                     tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                                              >  1:35792462/1‑68 (MQ=255)
                      cTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAtt                                             >  1:24618769/1‑68 (MQ=255)
                      cTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAtt                                             <  1:6792196/68‑1 (MQ=255)
                        ttAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc                                           <  1:40455619/67‑1 (MQ=255)
                         tAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAtt                                             >  1:36161016/1‑65 (MQ=255)
                          aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:29056289/1‑67 (MQ=255)
                          aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:5968568/1‑67 (MQ=255)
                          aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:22077454/1‑67 (MQ=255)
                          aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:15017141/1‑67 (MQ=255)
                            tGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCg                                       >  1:27887002/1‑68 (MQ=255)
                            tGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCg                                       <  1:41142111/68‑1 (MQ=255)
                            tGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCg                                       >  1:15106846/1‑68 (MQ=255)
                            tGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCg                                       <  1:3301217/68‑1 (MQ=255)
                              aCCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:42130950/1‑67 (MQ=255)
                               cccGGCGCGCGGCATCGTCTACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGCAGATTGCTGCGa                                      >  1:37834667/1‑66 (MQ=255)
                               cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGATTCGCGGAGATTGCTGCGa                                      >  1:39000722/1‑66 (MQ=255)
                               cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:33889933/1‑66 (MQ=255)
                               cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:34189981/1‑66 (MQ=255)
                               cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:4088906/1‑66 (MQ=255)
                               cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:30864305/1‑66 (MQ=255)
                               cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:5173036/1‑66 (MQ=255)
                               cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:35850734/1‑66 (MQ=255)
                               cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:38050409/1‑66 (MQ=255)
                               cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:7589736/1‑66 (MQ=255)
                               cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:17130003/1‑66 (MQ=255)
                               cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:19216576/1‑66 (MQ=255)
                               cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:29507457/1‑66 (MQ=255)
                               cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:21180066/1‑66 (MQ=255)
                               cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:18142558/1‑66 (MQ=255)
                               cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:10089022/1‑66 (MQ=255)
                               cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAg                                     <  1:31683698/67‑1 (MQ=255)
                                 cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtg                                  <  1:13659509/68‑1 (MQ=255)
                                    cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                <  1:32744290/67‑1 (MQ=255)
                                    cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                >  1:41521577/1‑67 (MQ=255)
                                    cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                >  1:3455037/1‑67 (MQ=255)
                                     gcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGc                               <  1:19682344/67‑1 (MQ=255)
                                      cgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                >  1:23177259/1‑65 (MQ=255)
                                       gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:23548837/67‑1 (MQ=255)
                                       gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:25514679/67‑1 (MQ=255)
                                       gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:8047783/67‑1 (MQ=255)
                                            aTCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAgg                        <  1:31230136/67‑1 (MQ=255)
                                              cGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACa                     <  1:34912671/68‑1 (MQ=255)
                                              cGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACa                     <  1:8572864/68‑1 (MQ=255)
                                              cGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACa                     <  1:36338585/68‑1 (MQ=255)
                                              cGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACa                     <  1:30087574/68‑1 (MQ=255)
                                               gTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACaa                    <  1:20477298/68‑1 (MQ=255)
                                                 cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAtt                  >  1:6537761/1‑68 (MQ=255)
                                                 cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:18442863/67‑1 (MQ=255)
                                                 cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:39250243/67‑1 (MQ=255)
                                                 cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:8445588/67‑1 (MQ=255)
                                                 cAACCTGCGGCCCCCGCAcgccgggtcataacagaagcaggtaatggcgactatttcggtcataaca                   >  1:38631006‑M2/1‑18 (MQ=255)
                                                  aaCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAttt                 <  1:17448873/68‑1 (MQ=255)
                                                   aCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTg                >  1:15763211/1‑68 (MQ=255)
                                                   aCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTg                >  1:12675008/1‑68 (MQ=255)
                                                    ccTGCTGGCAGCGCAcgccgggtcattacagaagcaggttatggcgactatttcggtcataacaccgg               <  1:4709332‑M2/68‑54 (MQ=255)
                                                    ccTGCTGGCAGCGCACGCGGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGa               >  1:22412131/1‑68 (MQ=255)
                                                     ctgctgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGAt              >  1:9283410/1‑68 (MQ=255)
                                                      tgctgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATa             >  1:28184518/1‑68 (MQ=255)
                                                         tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:14017820/68‑1 (MQ=255)
                                                         tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:6141109/68‑1 (MQ=255)
                                                         tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:10861776/68‑1 (MQ=255)
                                                         tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:13080095/68‑1 (MQ=255)
                                                         tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:4422006/68‑1 (MQ=255)
                                                         tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:43125154/68‑1 (MQ=255)
                                                         tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:4294722/68‑1 (MQ=255)
                                                         tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:32470019/68‑1 (MQ=255)
                                                         tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:25932758/68‑1 (MQ=255)
                                                         tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:24993610/68‑1 (MQ=255)
                                                         tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:7252515/68‑1 (MQ=255)
                                                          ggCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACg         >  1:8885037/1‑68 (MQ=255)
                                                            cAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGt        <  1:14597103/67‑1 (MQ=255)
                                                             aGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTa      >  1:30388910/1‑68 (MQ=255)
                                                             aGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTa      >  1:20177554/1‑68 (MQ=255)
                                                             aGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCACGACAAGTTGATAGACGttt      >  1:9474717/1‑67 (MQ=255)
                                                              gcgcACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTaa     >  1:10417992/1‑68 (MQ=255)
                                                                gcACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTaa     <  1:3193447/66‑1 (MQ=255)
                                                                gcACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTaa     <  1:26971024/66‑1 (MQ=255)
                                                                  aCGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAAca  <  1:33476918/67‑1 (MQ=255)
                                                                  aCGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAAca  <  1:21718756/67‑1 (MQ=255)
                                                                  aCGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAAca  <  1:16066938/67‑1 (MQ=255)
                                                                  |                                                                  
AAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACA  >  CP009273/2499255‑2499387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.