New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3693271328 (0.620)17 (0.040) 8/94 NT 5.5% intergenic (+18/+69) bcsG/ldrD DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small
?CP009273 = 3693281 313 (0.710)intergenic (+28/+59) bcsG/ldrD DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small

Only 100 of 497 total aligned reads displayed.

TCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCG  >  CP009273/3693214‑3693348
                                                                   |                                                                   
 cGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCc                                                                    >  1:37715949‑M2/1‑67 (MQ=255)
 cGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCc                                                                    >  1:10173259‑M2/1‑67 (MQ=255)
 cGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCc                                                                    >  1:4480647‑M2/1‑67 (MQ=255)
   ccTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCct                                                                   <  1:28759523‑M2/67‑3 (MQ=255)
     tGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcg                                                                <  1:13851955‑M2/68‑6 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:26431974‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:24887321‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:5078528‑M2/1‑62 (MQ=255)
        aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggc                                                              >  1:2271471‑M2/1‑60 (MQ=255)
        aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggc                                                              >  1:20169‑M2/1‑60 (MQ=255)
        aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggc                                                              >  1:29245985‑M2/1‑60 (MQ=255)
        aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               <  1:33510961‑M2/66‑7 (MQ=255)
        aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               <  1:43428832‑M2/66‑7 (MQ=255)
            cggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTgg                                                          <  1:37906979/67‑1 (MQ=255)
             ggcgACTGGGTGCCTTACCCGCGGTAAGAACGAAAAAGGCCGCAGAGTTTCCACCCTGCGGCCTGGt                                                         >  1:18589129/1‑67 (MQ=255)
             ggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt                                                         >  1:9191777/1‑67 (MQ=255)
             ggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt                                                         >  1:36317162/1‑67 (MQ=255)
                  cTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCggg                                                    <  1:2561697/67‑1 (MQ=255)
                      gTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCa                                                <  1:23288093/67‑1 (MQ=255)
                       tGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCaaa                                              >  1:13227276/1‑68 (MQ=255)
                        gCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCaaa                                              <  1:42693022/67‑1 (MQ=255)
                         ccTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAtt                                            >  1:16348074/1‑68 (MQ=255)
                          cTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTg                                           <  1:15428986/68‑1 (MQ=255)
                           ttACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttcgttcttactgcgg                                          >  1:42071550‑M2/1‑41 (MQ=255)
                           ttACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttcgttcttactgcgg                                          >  1:17042081‑M2/1‑41 (MQ=255)
                             aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                                        <  1:13670/68‑1 (MQ=255)
                             aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                                        <  1:41198413/68‑1 (MQ=255)
                             aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                                        >  1:5667124/1‑68 (MQ=255)
                             aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                                        <  1:20396507/68‑1 (MQ=255)
                             aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                                        <  1:36550390/68‑1 (MQ=255)
                             aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                                        >  1:40651993/1‑68 (MQ=255)
                             aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                                        >  1:14712173/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:24434316/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:23019140/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:39001619/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:37552546/1‑68 (MQ=255)
                                cGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:23664545/1‑67 (MQ=255)
                                 gCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTAc                                    <  1:35341848/68‑1 (MQ=255)
                                   aGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACg                                   >  1:41028468/1‑67 (MQ=255)
                                    gTAAGAACGAAAAAGGCCGCAGGGGGGAAACTCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGc                                 >  1:4600483/1‑68 (MQ=18)
                                    gTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGc                                 >  1:7755935/1‑68 (MQ=255)
                                      aaGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               <  1:34940402/68‑1 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCTCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:31677678/1‑65 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGccg                               >  1:33024086/1‑63 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:21027536/1‑65 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:4184248/1‑65 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:30333761/1‑65 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:30941137/1‑65 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:8608925/1‑65 (MQ=255)
                                          aCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGcc                             <  1:26080845/66‑1 (MQ=255)
                                          aCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGcc                             <  1:25169388/66‑1 (MQ=255)
                                          aCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGcc                             <  1:12292492/66‑1 (MQ=255)
                                           cGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTg                           >  1:21453325/1‑67 (MQ=255)
                                           cGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTg                           >  1:31985363/1‑67 (MQ=255)
                                               aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc                       >  1:35808878/1‑67 (MQ=255)
                                               aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc                       >  1:6194593/1‑67 (MQ=255)
                                               aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc                       >  1:9700403/1‑67 (MQ=255)
                                               aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc                       >  1:29816864/1‑67 (MQ=255)
                                               aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc                       >  1:1960586/1‑67 (MQ=255)
                                               aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc                       >  1:19403270/1‑67 (MQ=255)
                                                aaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGccc                     <  1:42897540/68‑1 (MQ=255)
                                                  ggCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc                   >  1:33787199/1‑68 (MQ=255)
                                                  ggCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc                   >  1:31529344/1‑68 (MQ=255)
                                                  ggCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc                   >  1:24294042/1‑68 (MQ=255)
                                                   tccGCAGAGTTTCCCCCCTGCTTAAGGGTCAGGGCGAAAATTCCCATTACCGCAGCCATACACCCGCa                  >  1:27689329/2‑68 (MQ=255)
                                                   gCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGCCGCCCGCa                  >  1:11604548/1‑68 (MQ=255)
                                                   gCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa                  >  1:34558971/1‑68 (MQ=255)
                                                   gCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa                  >  1:16741671/1‑68 (MQ=255)
                                                   gCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa                  >  1:26957799/1‑68 (MQ=255)
                                                   gCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa                  >  1:23795261/1‑68 (MQ=255)
                                                   gCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTCCCATTACGGCAGCCTGCCGCCCGCa                  >  1:17521364/1‑68 (MQ=255)
                                                    ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc                   <  1:11006641/66‑1 (MQ=255)
                                                    ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa                  <  1:34297057/67‑1 (MQ=255)
                                                    ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCAt                 >  1:31801885/1‑68 (MQ=255)
                                                    ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCAt                 >  1:39724236/1‑68 (MQ=255)
                                                    ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCAt                 >  1:38217518/1‑68 (MQ=255)
                                                    ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCAt                 >  1:28046517/1‑68 (MQ=255)
                                                        agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTAGGGCAGCCTGACGCCCGCATGac              <  1:19214697/67‑1 (MQ=255)
                                                        agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac              <  1:8245863/67‑1 (MQ=255)
                                                        agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac              <  1:41426041/67‑1 (MQ=255)
                                                        agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac              <  1:18176549/67‑1 (MQ=255)
                                                         gagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGacac            >  1:7551034/1‑68 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGaca             <  1:22414493/65‑1 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           <  1:13009891/67‑1 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           <  1:718467/67‑1 (MQ=255)
                                                             ttCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           <  1:126870/65‑1 (MQ=255)
                                                              tCCCCCCCGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTAc       <  1:15890173/68‑1 (MQ=255)
                                                                cccccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACt      >  1:28340371/1‑67 (MQ=255)
                                                                 ccccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACtt     >  1:32640695/1‑67 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:11766758/1‑68 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:6272917/1‑68 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:10611823/1‑68 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:5426067/1‑68 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:15090437/1‑68 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:37097409/1‑68 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:20790683/1‑68 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:22054384/1‑68 (MQ=255)
                                                                   ccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCg  <  1:27529033/68‑1 (MQ=255)
                                                                   ccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCg  <  1:39975997/68‑1 (MQ=255)
                                                                   ccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCg  <  1:3929233/68‑1 (MQ=255)
                                                                   |                                                                   
TCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCG  >  CP009273/3693214‑3693348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.