New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3999175 =475 (0.900)27 (0.060) 8/96 NT 6.2% intergenic (+84/‑49) pldA/recQ outer membrane phospholipase A/ATP‑dependent DNA helicase
?CP009273 3999197 = 411 (0.910)intergenic (+106/‑27) pldA/recQ outer membrane phospholipase A/ATP‑dependent DNA helicase

Only 100 of 626 total aligned reads displayed.

CCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAA  >  CP009273/3999130‑3999264
                                                                   |                                                                   
ccAGGATTACCCTCTCAGAGACTAAAAGCATTGTAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                     <  1:10273614/68‑1 (MQ=255)
ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                     <  1:40089371/68‑1 (MQ=255)
ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                     <  1:8482865/68‑1 (MQ=255)
ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                     <  1:32122123/68‑1 (MQ=255)
cacttccgcctgcgccacattcaccccgattgcctgaaataaaaacaggcgctattttcagcgcctgt                                                                     <  1:4891096‑M2/1‑1 (MQ=255)
   ggATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtttt                                                                  >  1:27242709/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:11804048/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:38544955/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:38071548/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:17316572/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:22425054/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:15504900/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:34605512/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:13308563/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:30637995/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAACAGCGCCTGTTTTTa                                                                >  1:39013356/1‑68 (MQ=255)
     aTTACCCTCTCAGAGAATAAAAGCATTGCAGTTTCTCGAGCACGCGCTGAAAATAGCGCCTGTTtata                                                                >  1:1203635/1‑68 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                           >  1:11177981/1‑68 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                           >  1:37670393/1‑68 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                           <  1:42480162/68‑1 (MQ=255)
            tctcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAg                                                          >  1:29744271/1‑67 (MQ=255)
            tctcAGAGACTAAAAGCATTGCAGTTTCTCACGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAgg                                                         <  1:26676421/68‑1 (MQ=255)
              tcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCa                                                       <  1:43538030/68‑1 (MQ=255)
              tcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCa                                                       <  1:6868816/68‑1 (MQ=255)
               cAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                                      >  1:19696453/1‑68 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                                      >  1:1752568/1‑67 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                                      >  1:43318261/1‑67 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAAt                                                     >  1:40943410/1‑68 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGACTGTTTTTATTTCAGGCaa                                                      >  1:8187983/1‑67 (MQ=255)
                accttcaccccccttgcctgcaatcaaaacaggcgcaattttcagcgcctgTTTTTATTTCAGGCAAt                                                     <  1:18003109‑M2/17‑1 (MQ=255)
                  agaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCg                                                   >  1:533286/1‑68 (MQ=255)
                   taCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAAt                                                     <  1:10697095/64‑1 (MQ=255)
                   gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAAt                                                     <  1:39261619/65‑1 (MQ=255)
                   gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAAt                                                     <  1:20039623/65‑1 (MQ=255)
                   gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAAt                                                     <  1:20236524/65‑1 (MQ=255)
                   gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAAt                                                     <  1:11533275/65‑1 (MQ=255)
                   gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCg                                                   <  1:35414389/67‑1 (MQ=255)
                    tcaccccgattgcctgaaataaaaacaggcgctattttcagcgcctgTTTTTATTTCAGGCAATCggg                                                 <  1:12766420‑M2/21‑1 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:39427975/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:29252099/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:42990912/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:26093970/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:18394794/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:23417636/1‑68 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgggg                                                <  1:26741068/68‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgggg                                                <  1:6435762/68‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgggg                                                <  1:36515035/68‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 <  1:889783/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 <  1:25279303/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 <  1:28830123/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 <  1:21023784/67‑1 (MQ=255)
                       ccccgattgcctgaaataaaaaCAGGCGGTGAAAATAGCGCCGGTTTTTATTTCAGGCAATCGGGGTg                                              <  1:32704979‑M1/46‑1 (MQ=255)
                        cccgattgcctgaaataaaaaCAGGCGGTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGa                                             <  1:19220089‑M1/47‑1 (MQ=255)
                        cccgattgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTGTTAGTTCAGGCAATCGGGGTGa                                             <  1:6768617‑M1/47‑1 (MQ=255)
                         ccgattgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGaa                                            <  1:20542628‑M1/48‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           >  1:33306021/1‑68 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           >  1:34173025/1‑68 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           >  1:18719826/1‑68 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           <  1:760091/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCCCAGGCGCTGAAAATAGCGCCTGTTTATATTTCAGGCAATCGGGGTGAAt                                           >  1:2570985/1‑68 (MQ=255)
                           gCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtg                                          >  1:36842615/1‑68 (MQ=255)
                           gCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtg                                          >  1:12352703/1‑68 (MQ=255)
                            cATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtgt                                         >  1:39765606/1‑68 (MQ=255)
                            cATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtgt                                         >  1:2705337/1‑68 (MQ=255)
                               tGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGgc                                      <  1:14432865/68‑1 (MQ=255)
                                gCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGgcg                                     <  1:57045/68‑1 (MQ=255)
                                gCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGgc                                      >  1:16720050/1‑67 (MQ=255)
                                gCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGgc                                      >  1:32486501/1‑67 (MQ=255)
                                  aGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCa                                   >  1:33635182/1‑68 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg                                 <  1:28098755/67‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg                                 <  1:3117619/67‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAg                                  <  1:31764123/66‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAg                                  <  1:15100814/66‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGc                                <  1:30314698/68‑1 (MQ=255)
                                      tctcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCCGGCAATCGGGGTGAATGTGGCGCAGGCg                               <  1:24938106/68‑1 (MQ=255)
                                      tctcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCg                               <  1:14024478/68‑1 (MQ=255)
                                       ctcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCgg                              >  1:10846856/1‑68 (MQ=255)
                                        tcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGa                             <  1:24039619/68‑1 (MQ=255)
                                            gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGTCAATCGGGGTGAATGTGGCGCAGGCGGAAgtg                         <  1:3698820/68‑1 (MQ=255)
                                            gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtg                         >  1:23170351/1‑68 (MQ=255)
                                            gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgt                          <  1:34016529/67‑1 (MQ=255)
                                              AGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtgt                        >  1:22917419‑M1/1‑67 (MQ=255)
                                              AGGCGCTGAAAATAGCGCCTGTTTTAATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGtt                       <  1:27499025‑M1/68‑1 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                    >  1:25847661‑M1/1‑67 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                    >  1:35806341‑M1/1‑67 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                    >  1:720005‑M1/1‑67 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                    >  1:595520‑M1/1‑67 (MQ=255)
                                                    TGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATc                  >  1:13669308‑M1/1‑67 (MQ=255)
                                                    TGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCt                 >  1:40432348‑M1/1‑68 (MQ=255)
                                                          tAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGt            >  1:14678754/1‑67 (MQ=255)
                                                            gcgcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCg         >  1:13005061‑M2/8‑68 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa       <  1:21790860‑M2/63‑1 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa       <  1:35129189‑M2/63‑1 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa       <  1:10078435‑M2/63‑1 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa       >  1:15846576‑M2/6‑68 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa       >  1:4201112‑M2/6‑68 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa       <  1:41470581‑M2/63‑1 (MQ=255)
                                                                ctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGc     <  1:41161213‑M2/65‑1 (MQ=255)
                                                                ctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGc     <  1:37332284‑M2/65‑1 (MQ=255)
                                                                   tttttATTTCAGGCTATGGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAAGCTGGAGTCCGGAGCTaa  <  1:24791370/68‑1 (MQ=255)
                                                                   |                                                                   
CCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAA  >  CP009273/3999130‑3999264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.