New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1070341 =NA (NA)7 (0.020) 5/94 NT NA noncoding (1/28 nt) REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences
?CP009273 1070369 = NA (NA)intergenic (+33/+7) rutR/putA rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase

Only 100 of 758 total aligned reads displayed.

AGCGGATTATTATTGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGA  >  CP009273/1070302‑1070435
                                                                   |                                                                  
   ggATTATTATTGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTAcc                                                                 <  1:29140531/68‑1 (MQ=255)
      ttattattGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTg                                                               <  1:21241080/67‑1 (MQ=255)
      ttattattGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTg                                                               <  1:26436273/67‑1 (MQ=255)
      ttattattGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGt                                                              >  1:36163395/1‑68 (MQ=255)
      ttattattGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGt                                                              <  1:12263551/68‑1 (MQ=255)
      ttattattGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGt                                                              <  1:13933705/68‑1 (MQ=255)
        attattGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGttt                                                            >  1:16595681/1‑68 (MQ=255)
        attattGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGttt                                                            >  1:35903006/1‑68 (MQ=255)
        attattGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGttt                                                            >  1:3434037/1‑68 (MQ=255)
          ttttGAGGGGATTCGCCCACGTTAACGATGCCGGAGGAGGTTGTAACATGCTCCGGCTACCTGTTTaa                                                          <  1:7706675/66‑1 (MQ=255)
          tattGAGGGGATTCGACCCCGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGCCTACCTGTTTa                                                           >  1:2055068/1‑67 (MQ=255)
          tattGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTaa                                                          <  1:8007256/68‑1 (MQ=255)
          tattGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTaa                                                          <  1:24029594/68‑1 (MQ=255)
          tattGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTaa                                                          <  1:31608519/68‑1 (MQ=255)
          tattGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTaa                                                          <  1:13040989/68‑1 (MQ=255)
           attGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTaa                                                          >  1:28281050/1‑67 (MQ=255)
           attGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTaa                                                          >  1:32222839/1‑67 (MQ=255)
           attGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTaa                                                          >  1:25342415/1‑67 (MQ=255)
           attGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTaa                                                          >  1:36444088/1‑67 (MQ=255)
           attGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTaa                                                          >  1:41096509/1‑67 (MQ=255)
           attGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTaa                                                          >  1:10300764/1‑67 (MQ=255)
           attGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTaa                                                          >  1:10057008/1‑67 (MQ=255)
           attGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAAc                                                         <  1:33133307/68‑1 (MQ=255)
           attGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAAc                                                         <  1:32490667/68‑1 (MQ=255)
           attGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAAc                                                         <  1:13354949/68‑1 (MQ=255)
            ttGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAAcc                                                        <  1:19209215/68‑1 (MQ=255)
            ttGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAAcc                                                        <  1:7234473/68‑1 (MQ=255)
            ttGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAAcc                                                        <  1:6612792/68‑1 (MQ=255)
            ttGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAAcc                                                        <  1:4492734/68‑1 (MQ=255)
             tGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCt                                                       >  1:13621258/1‑68 (MQ=255)
             tGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCt                                                       >  1:12646623/1‑68 (MQ=255)
             tGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCt                                                       >  1:37961723/1‑68 (MQ=255)
             tGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCt                                                       >  1:15246038/1‑68 (MQ=255)
             tGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCt                                                       >  1:41482521/1‑68 (MQ=255)
             tGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCt                                                       >  1:5787441/1‑68 (MQ=255)
             tGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCt                                                       >  1:30434052/1‑68 (MQ=255)
             tGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCt                                                       >  1:18565809/1‑68 (MQ=255)
             tGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCATCCGGCTACCTGTTTAACCt                                                       >  1:30918858/1‑68 (MQ=255)
                ggggATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCtata                                                    >  1:29396080/1‑68 (MQ=255)
                ggggATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCtata                                                    >  1:34096250/1‑68 (MQ=255)
                ggggATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCtata                                                    >  1:24770656/1‑68 (MQ=255)
                ggggATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCtata                                                    >  1:6036642/1‑68 (MQ=255)
                ggggATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCtat                                                     <  1:2183407/67‑1 (MQ=255)
                ggggATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATACTCCGGCTACCAGTTTAACCtata                                                    >  1:17485132/1‑68 (MQ=255)
                  ggATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAg                                                   <  1:23161400/67‑1 (MQ=255)
                  ggATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAg                                                   >  1:40495048/1‑67 (MQ=255)
                    aTTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTc                                                 <  1:11546347/67‑1 (MQ=255)
                    aTTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTc                                                 <  1:38321870/67‑1 (MQ=255)
                    aTTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTc                                                 <  1:9446857/67‑1 (MQ=255)
                    aTTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTc                                                 <  1:19551362/67‑1 (MQ=255)
                     ttCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCa                                                <  1:23611397/67‑1 (MQ=255)
                        gACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTaa                                            <  1:10742333/68‑1 (MQ=255)
                        gACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTaa                                            <  1:28605318/68‑1 (MQ=255)
                         aCCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTaa                                            >  1:9240032/1‑67 (MQ=255)
                         aCCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTaa                                            >  1:39505541/1‑67 (MQ=255)
                             cGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGG                                       <  1:8747238‑M1/68‑1 (MQ=255)
                                   aGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTa                                  >  1:42606180/1‑67 (MQ=255)
                                   aGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTa                                  >  1:33574368/1‑67 (MQ=255)
                                    gATGCCGGATGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACc                                <  1:6976328‑M2/68‑2 (MQ=255)
                                    gATGCCGGAGGAGGTTGTAACATCCTCCGGCTCCCTGTTTAACCTATAGTCATTAAGCTGGCGTTACc                                <  1:14991874‑M2/68‑2 (MQ=255)
                                    gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACc                                <  1:3910299‑M2/68‑2 (MQ=255)
                                    gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACc                                <  1:18076040‑M2/68‑2 (MQ=255)
                                    gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACc                                <  1:43435246‑M2/68‑2 (MQ=255)
                                    gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACc                                <  1:42050167‑M2/68‑2 (MQ=255)
                                    gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACc                                <  1:26783608‑M2/68‑2 (MQ=255)
                                    gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACc                                <  1:25808412‑M2/68‑2 (MQ=255)
                                    gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACc                                <  1:30049516‑M2/68‑2 (MQ=255)
                                    gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACc                                <  1:27735914‑M2/68‑2 (MQ=255)
                                    gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACc                                <  1:2562093‑M2/68‑2 (MQ=255)
                                    gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGGTTAACCTATAGTCATTAAGCTGGCGTTACc                                <  1:38197344‑M2/68‑2 (MQ=255)
                                     aTGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACc                                <  1:15748196‑M2/67‑2 (MQ=255)
                                      tGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACcgc                              >  1:528761‑M2/1‑65 (MQ=255)
                                        CCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCa                            <  1:11927271‑M1/68‑1 (MQ=255)
                                            AGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCg                         <  1:16099487‑M1/67‑1 (MQ=255)
                                             GGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGc                       <  1:40003960‑M1/68‑1 (MQ=255)
                                             GGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGc                       <  1:12106029‑M1/68‑1 (MQ=255)
                                                    gTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTa                <  1:2150467/68‑1 (MQ=255)
                                                    gTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTa                <  1:6344817/68‑1 (MQ=255)
                                                    gTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTa                <  1:22473827/68‑1 (MQ=255)
                                                      aaCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTAtt              <  1:31193545/68‑1 (MQ=255)
                                                      aaCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTAtt              <  1:27136025/68‑1 (MQ=255)
                                                      aaCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTAt               >  1:22124840/1‑67 (MQ=255)
                                                      aaCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTAt               >  1:14221257/1‑67 (MQ=255)
                                                       aCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTc             >  1:4186568/1‑68 (MQ=255)
                                                       aCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTc             >  1:10966964/1‑68 (MQ=255)
                                                       aCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTc             >  1:24991402/1‑68 (MQ=255)
                                                        cATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTc             >  1:20134663/1‑67 (MQ=255)
                                                         aTCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACcgccagcttaatgactataggt           >  1:17151385‑M2/1‑46 (MQ=255)
                                                         aTCCTCCAGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTcac           >  1:19839088/1‑68 (MQ=255)
                                                          tcctccggcTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTcaca          <  1:3678681‑M2/59‑1 (MQ=255)
                                                           cctccggcTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCCGCGGTATTcac           >  1:37238653‑M2/9‑66 (MQ=255)
                                                           cctccggcTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTcac           >  1:37647670‑M2/9‑66 (MQ=255)
                                                           cctccggcTACCTGTTTAACCTATAGTCATTAAGCTGGCGATACCGCCAGCCGCAGCGGTATTcac           >  1:5127727‑M2/9‑66 (MQ=255)
                                                           cctccggcGACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCacac         >  1:27467661‑M2/9‑68 (MQ=255)
                                                             tccggcTACCTGTTTAACCTATAGTCATTAAGATGGCGTTACCGCCAGCGGCAGCGGTATTCACACTc       >  1:38693028‑M2/7‑68 (MQ=255)
                                                               cggcTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAg     <  1:22740700‑M2/64‑1 (MQ=255)
                                                                ggcTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGc    >  1:42412698‑M2/4‑68 (MQ=255)
                                                                ggcTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGc    >  1:2804477‑M2/4‑68 (MQ=255)
                                                                 gcTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCg   >  1:42873265‑M2/3‑68 (MQ=255)
                                                                 gcTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGAGGTATTCACACTCAGCg   >  1:35072993‑M2/3‑68 (MQ=255)
                                                                   |                                                                  
AGCGGATTATTATTGAGGGGATTCGACCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGA  >  CP009273/1070302‑1070435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.