| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1433166 = | 249 (0.470) | 16 (0.040) | 9/96 | NT | 5.6% | coding (1876/3525 nt) | pfo | pyruvate‑flavodoxin oxidoreductase |
| ? | CP009273 | 1433229 = | 327 (0.720) | coding (1813/3525 nt) | pfo | pyruvate‑flavodoxin oxidoreductase | |||||
Only 100 of 500 total aligned reads displayed.
GATTGGCGCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACTTTTGGCAATCGCACCCT > CP009273/1433163‑1433294 | GGCGCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCagag < 1:30631557‑M1/65‑1 (MQ=255) GCGCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCt < 1:13785365‑M1/67‑1 (MQ=255) GCGCTGTGCGGATTTACCGGATGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTg > 1:39097078‑M1/1‑68 (MQ=255) CGCTGTGCGGATTTCCCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTg > 1:10675301‑M1/1‑67 (MQ=255) CGCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTg > 1:43646036‑M1/1‑67 (MQ=255) CGCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTg > 1:24162654‑M1/1‑67 (MQ=255) CGCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTg < 1:22229203‑M1/67‑1 (MQ=255) CGCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTg > 1:36083755‑M1/1‑67 (MQ=255) CGCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTg < 1:15811434‑M1/67‑1 (MQ=255) CGCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTg > 1:42342123‑M1/1‑67 (MQ=255) CGCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTg < 1:36604055‑M1/67‑1 (MQ=255) GCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGcc < 1:40590421‑M1/68‑1 (MQ=255) GCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGcc < 1:3387942‑M1/68‑1 (MQ=255) GCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGcc < 1:39604232‑M1/68‑1 (MQ=255) GCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGcc < 1:41775037‑M1/68‑1 (MQ=255) GCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGcc < 1:22993324‑M1/68‑1 (MQ=255) GCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGc > 1:19124847‑M1/1‑67 (MQ=255) GCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCACCGCCAGAGCCTGcc < 1:36329960‑M1/68‑1 (MQ=255) GTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGt > 1:26703464‑M1/1‑68 (MQ=255) ggATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCg < 1:14958579/68‑1 (MQ=255) ggATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCg < 1:14877120/68‑1 (MQ=255) gATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGt > 1:1170411/1‑68 (MQ=255) tttACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGtt > 1:37924860/1‑67 (MQ=255) tttACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGtt > 1:34353409/1‑67 (MQ=255) tttACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGtt > 1:31255032/1‑67 (MQ=255) tttACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGtt > 1:28947823/1‑67 (MQ=255) tttACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGtt > 1:18639818/1‑67 (MQ=255) tttACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGtt > 1:41064785/1‑67 (MQ=255) tttACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGtt > 1:17120956/1‑67 (MQ=255) tttACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCAAGAGCCTGCCAGTTGCGtt > 1:6485250/1‑67 (MQ=255) ttACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTcc < 1:11017993/68‑1 (MQ=255) ttACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTcc < 1:21981014/68‑1 (MQ=255) ttACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTcc < 1:3184236/68‑1 (MQ=255) ttACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTcc < 1:15981611/68‑1 (MQ=255) ttACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTcc < 1:27288384/68‑1 (MQ=255) ttACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTcc < 1:27762825/68‑1 (MQ=255) ttACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTcc < 1:3425704/68‑1 (MQ=255) tACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTcca < 1:43145732/68‑1 (MQ=255) tACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTcca < 1:12324775/68‑1 (MQ=255) tACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTcca < 1:6168914/68‑1 (MQ=255) tACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTcca < 1:21171528/68‑1 (MQ=255) aCCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTccac < 1:16443411/68‑1 (MQ=255) ccGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTccacc < 1:9531659/68‑1 (MQ=255) ttGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGa < 1:27082760/67‑1 (MQ=255) tGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGAt < 1:29959120/67‑1 (MQ=255) tGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGAt < 1:32638083/67‑1 (MQ=255) tGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGAt < 1:43556503/67‑1 (MQ=255) tGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGAt < 1:36792680/67‑1 (MQ=255) tGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGAt < 1:37238929/67‑1 (MQ=255) tGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGAt < 1:19715479/67‑1 (MQ=255) tGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGAt < 1:26301631/67‑1 (MQ=255) tGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGAt < 1:1881724/67‑1 (MQ=255) tGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGAt < 1:25751470/67‑1 (MQ=255) tGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGAt < 1:18389708/67‑1 (MQ=255) aCGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTgg < 1:25993639/68‑1 (MQ=255) aCGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTgg < 1:23518001/68‑1 (MQ=255) aCGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTg > 1:19391660/1‑67 (MQ=255) aCGGAACTTCTTCTAAGGATTCACGCGCCAGCGCCAGAGACTGCCAGTTGCGTTCCACCAGATCCTg > 1:32200855/1‑67 (MQ=255) cGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGTCAGTTGCGTTCCACCAGATCCTGGc < 1:24712943/68‑1 (MQ=255) cGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTgg > 1:25539721/1‑67 (MQ=255) cGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGc < 1:10370851/68‑1 (MQ=255) cGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGGTCCACCAGATCCTgg > 1:35046733/1‑67 (MQ=255) aggAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTgg > 1:2516558/2‑67 (MQ=255) ggAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTgg > 1:34027355/1‑66 (MQ=255) ggAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGcc < 1:41346989/68‑1 (MQ=255) tccgttccaaccggaaaaaccccaccgcgccaGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCt < 1:27998055‑M2/35‑1 (MQ=255) aaCTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCt < 1:33571937/67‑1 (MQ=255) aaCTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCt < 1:8493142/67‑1 (MQ=255) aaCTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCt < 1:40144143/67‑1 (MQ=255) ccgttgcaaccggtaaacccgcacagcgccaGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCttt < 1:9018531‑M2/37‑1 (MQ=255) aCTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCttt > 1:35350186/1‑68 (MQ=255) aCTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCttt < 1:13139617/68‑1 (MQ=255) cttcttCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCttt > 1:17826881/1‑67 (MQ=255) ttctACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGc > 1:2854654/1‑59 (MQ=255) tctACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCt > 1:10013027/1‑65 (MQ=255) tctACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACt < 1:34578328/68‑1 (MQ=255) ctACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCt > 1:15348305/1‑64 (MQ=255) tACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGt < 1:3826846/68‑1 (MQ=255) tACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGt < 1:873328/68‑1 (MQ=255) aCGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTa > 1:12789993/1‑68 (MQ=255) cGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTa > 1:3020563/1‑67 (MQ=255) cGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTa > 1:11919275/1‑67 (MQ=255) cGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTa > 1:5531586/1‑67 (MQ=255) ggATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTa > 1:1806733/1‑66 (MQ=255) ggATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAAc < 1:35678116/68‑1 (MQ=255) aTTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACt < 1:33285134/67‑1 (MQ=255) aCGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACTTTTgg < 1:39466847/68‑1 (MQ=255) gcgccagcgccaGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACTTTTGGCa < 1:20257246/68‑1 (MQ=255) gcgccagcgccaGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACTTTTGGCa < 1:5059072/68‑1 (MQ=255) ccagcgccagAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACTTTTAGCAATc > 1:6921700/1‑68 (MQ=255) gccaGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACTTTTGGCAATCGCAcc < 1:37527982‑M2/64‑1 (MQ=255) gccaGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACTTTTGGCAATCGCAcc < 1:7308542‑M2/64‑1 (MQ=255) gccaGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACTTTTGGCAATCGCAcc < 1:14210497‑M2/64‑1 (MQ=255) gccaGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACTTTTGGCAATCGCAc > 1:16821744‑M2/5‑67 (MQ=255) caGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACTTTTGGCAATCGCACCCt < 1:21634044‑M2/66‑1 (MQ=255) caGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACTTTTGGCAATCGCACCCt < 1:2240231‑M2/66‑1 (MQ=255) caGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACTTTTGGCAATCGCACCCt < 1:7818745‑M2/66‑1 (MQ=255) caGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACTTTTGGCAATCGCACCCt < 1:32997407‑M2/66‑1 (MQ=255) caGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACTTTTGGCAATCGCACCCt < 1:22541365‑M2/66‑1 (MQ=255) caGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACTTTTGGCAATCGCACCCt < 1:31527111‑M2/66‑1 (MQ=255) | GATTGGCGCTGTGCGGATTTACCGGTTGCAACGGAACTTCTTCTACGGATTCACGCGCCAGCGCCAGAGCCTGCCAGTTGCGTTCCACCAGATCCTGGCCTTTGCTACTGTAACTTTTGGCAATCGCACCCT > CP009273/1433163‑1433294 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |