| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2000783 | 420 (0.800) | 31 (0.070) | 8/96 | NT | 6.4% | coding (1147/1488 nt) | amyA | cytoplasmic alpha‑amylase |
| ? | CP009273 | = 2000836 | 554 (1.230) | coding (1200/1488 nt) | amyA | cytoplasmic alpha‑amylase | |||||
Only 100 of 665 total aligned reads displayed.
GGTGGTGACGGGCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGCCTTTA > CP009273/2000771‑2000903 | ggtggtGACGGGCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCgc > 1:34774479‑M2/1‑66 (MQ=255) gtggtgACGGGCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCgc < 1:8081842‑M2/67‑3 (MQ=255) gtggtgACGGGCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCgc < 1:38544677‑M2/67‑3 (MQ=255) aCGGGCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCgcccgtca < 1:26802379‑M2/67‑9 (MQ=255) cGGGCAAGCCTATCCGATAGATATGCCAATAGTCGACCAGCTGGATGTGTTATTTCTCGCCCCTCacc > 1:12048089/1‑66 (MQ=255) cGGGCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGc > 1:20915439/1‑68 (MQ=255) cGGGCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGc > 1:4016718/1‑68 (MQ=255) gggCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCg < 1:20259667/68‑1 (MQ=255) ggCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGt > 1:39595050/1‑68 (MQ=255) gCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCgcccgtcaccac > 1:19784858‑M2/1‑55 (MQ=255) aaCCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCg < 1:13904499/68‑1 (MQ=255) ccctATCCGATAGAAATGCCAATAATCGAACCGCTTTATGAGTTAATTCTCgcccgtcaccaccgaca > 1:14653554‑M2/2‑51 (MQ=255) aCCTTTCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCgcccgtcaccaccgaca > 1:23845544‑M2/1‑51 (MQ=255) aCCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCgcccgtcaccaccgaca > 1:20506513‑M2/1‑51 (MQ=255) ccTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGc > 1:32448392/1‑67 (MQ=255) acccGCTAGATATGCCAATAATCGACCAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCAc < 1:36547126/66‑1 (MQ=255) aTCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCAc < 1:266874/68‑1 (MQ=255) aTCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCAc < 1:37667952/68‑1 (MQ=255) ccGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACgg > 1:26093625/1‑68 (MQ=255) ccGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACgg < 1:25701176/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGGTTGTTGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:39963842/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:33308295/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:30922335/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:37273923/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:33768463/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:35114532/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:36177850/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:29669556/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:41391927/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:42775716/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:5981499/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:6265/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:6582302/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:7759040/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:9212271/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:9756834/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:10221329/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:10992224/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:11520024/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:1294719/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:22523870/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:13135415/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:16511479/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:17070785/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:18782989/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:19312241/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:2116205/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:21598669/68‑1 (MQ=255) acatagataTGCCAAGAAACGCACATCTTTATGAGTTAATTCTCTCCCTTCAGCGTTTCGCCCACGgt < 1:32748447/66‑1 (MQ=255) gatagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtg > 1:28148171/1‑68 (MQ=255) tagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtgt < 1:36978609/67‑1 (MQ=255) tagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtgt < 1:43200755/67‑1 (MQ=255) agataTGCCAATAATCGCACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTAc > 1:31683268/1‑68 (MQ=255) agataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTAc > 1:10627157/1‑68 (MQ=255) agataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTAc > 1:43612589/1‑68 (MQ=255) tatGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAg > 1:42086519/1‑67 (MQ=255) tatGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGa < 1:27611463/68‑1 (MQ=255) tatGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGa < 1:18090563/68‑1 (MQ=255) tatGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGa < 1:34532822/68‑1 (MQ=255) gCCAATAATCGAACAGCTTGATGAGTTAATTCTCgcccgccaccaccgacatcttcgtaatgcgcacc > 1:24059955‑M2/1‑34 (MQ=255) gCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGt < 1:13391830/68‑1 (MQ=255) ccAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGtt > 1:27262795/1‑68 (MQ=255) ccAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGtt > 1:9584398/1‑68 (MQ=255) ccAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGtt > 1:40950836/1‑68 (MQ=255) cAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTa > 1:3891152/1‑68 (MQ=255) aataatCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTAt > 1:7107689/1‑68 (MQ=255) ataatCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTAtt < 1:39215627/68‑1 (MQ=255) ataatCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTAtt < 1:30270599/68‑1 (MQ=255) taatCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTAttt > 1:29055935/1‑68 (MQ=255) aatCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTAtttt < 1:10085224/68‑1 (MQ=255) atCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTAtttt > 1:4627919/1‑67 (MQ=255) atCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTAtttt > 1:17453735/1‑67 (MQ=255) aCAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGAcc > 1:24672001/1‑68 (MQ=255) aCAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGAcc > 1:19132524/1‑68 (MQ=255) aCAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGAcc > 1:31940886/1‑68 (MQ=255) aGCTTGATGAGTTAATTCTAGCCAGTCAGCGTTTCGCCCACGGTGTACAGACGTTAATTTTCGACCa > 1:12719933/1‑67 (MQ=255) ttGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCa < 1:15252950/64‑1 (MQ=255) ttGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCa < 1:28650515/64‑1 (MQ=255) ttGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCa < 1:22983134/64‑1 (MQ=255) ttGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCa < 1:508551/64‑1 (MQ=255) ttGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCg > 1:541359/1‑68 (MQ=255) tgatgaGTTAATTCTCGCCCGTGAGCGTTTCGCCCACGGTGTACAGTCGTTATTTTTCGAGCATCCGa < 1:35593673/68‑1 (MQ=255) tgatgaGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGa < 1:40682316/68‑1 (MQ=255) gaGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTAt > 1:41758763/1‑49 (MQ=255) gaGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACt > 1:15875657/1‑67 (MQ=255) gaGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACt > 1:14130631/1‑67 (MQ=255) gaGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACt > 1:31319004/1‑67 (MQ=255) gaGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTg < 1:30571200/68‑1 (MQ=255) gaGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTg < 1:11815774/68‑1 (MQ=255) aGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGc > 1:18620142/1‑68 (MQ=255) gTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGc < 1:29275426/67‑1 (MQ=255) gTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGc < 1:4254188/67‑1 (MQ=255) aTTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGc < 1:34144095/68‑1 (MQ=255) aTTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGc < 1:23564733/68‑1 (MQ=255) aTTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGc < 1:24912536/68‑1 (MQ=255) aTTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGc < 1:869394/68‑1 (MQ=255) aTTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGc < 1:2220468/68‑1 (MQ=255) ttCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGCCCATCCGAACTGCATTg > 1:21438594/1‑66 (MQ=255) ttCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGcc < 1:7455183/68‑1 (MQ=255) ctcGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGCCtt > 1:2625510/1‑68 (MQ=255) | GGTGGTGACGGGCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGCCTTTA > CP009273/2000771‑2000903 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |