BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4608937	812 (1.160)	4 (0.010)	4/96	NT	0.58%	coding (892/1323 nt)	deoA	thymidine phosphorylase
*	?	CP009273	= 4609113	668 (1.110)	4 (0.010)	4/96	NT	0.58%	coding (1068/1323 nt)	deoA	thymidine phosphorylase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 172 total aligned reads displayed.

TTGATGTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4608863‑4608937

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcgcgGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  CP009273/4609113‑4609048

TTGATGTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATTACGCCGAA                                                                           >  1:18337772/1‑68

TTGATGTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAA                                                                           >  1:48464477/1‑68

TTGATGTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAA                                                                           >  1:12925801/1‑68

TTGATGTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAA                                                                           >  1:35093019/1‑68

  GATGTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGC                                                                         >  1:52051296/1‑68

  GATGTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGC                                                                         >  1:47853234/1‑68

  GATGTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGC                                                                         >  1:39360592/1‑68

   ATGTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGC                                                                         >  1:55493459/1‑67

   ATGTCACGATGGCGCTGTGAGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGC                                                                         >  1:34354847/1‑67

    TGTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGC                                                                       >  1:22602376/1‑68

    TGTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGC                                                                       >  1:25918939/1‑68

    TGTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGC                                                                       >  1:38763274/1‑68

    TGTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGC                                                                       >  1:48421264/1‑68

     gaCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGAAAACTGGCGAAAGATGACGCCGAAGCGC                                                                       >  1:4732849/3‑67

     GTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGC                                                                       >  1:40071128/1‑67

     GTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGC                                                                       >  1:40281902/1‑67

     GTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGC                                                                       >  1:36057310/1‑67

     GTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGC                                                                       >  1:11661957/1‑67

     GTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGC                                                                       >  1:53483308/1‑67

       CACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCG                                                                    <  1:10319173/68‑1

       CACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCG                                                                    <  1:19238727/68‑1

       CACGATGGCGCTGGGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCG                                                                    <  1:32179095/68‑1

               CGCTGTGCGTGGAGAAGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGGGTATCC                                                             <  1:31980351/67‑1

                              TGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGGGTATCCATTTCACTGACAAAAC                                             <  1:40622752/68‑1

                               GCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGGGTATCCATTTCACTGACAAAACC                                            <  1:15117090/68‑1

                                           CAAACTGGCGAAAGATGACGCCGAAGCGCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAG                                 <  1:51686635/67‑1

                                                               CCGAAGCGCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCA            >  1:18040620/1‑68

                                                                 cccGCGCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:5310968/4‑68

                                                                   AGCGCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:21159489/1‑66

                                                                   AGCGCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:41268678/1‑66

                                                                   AGCGCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:45179000/1‑66

                                                                   AGCGCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:46190615/1‑66

                                                                   AGCGCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:24093009/1‑66

                                                                   AGCGCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:6004530/1‑66

                                                                     CGCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCTTAGACTGCTTTCGTCAGCATC          >  1:11083790/1‑64

                                                                     CGCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTTCTTTCGTCAGCATC          >  1:53243341/1‑64

                                                                     CGCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCCGCATC          >  1:18431003/1‑64

                                                                     CGCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:53307634/1‑64

                                                                     CGCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:25261965/1‑64

                                                                     CGCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:30916138/1‑64

                                                                     CGCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:27436858/1‑64

                                                                      GCGCGGGTATCCATTTCATTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCT       <  1:43001996/66‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAAGCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGC        <  1:20896097/65‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGT     <  1:8262184/68‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGT     <  1:32914613/68‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGT     <  1:2335685/68‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGT     <  1:35653809/68‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGC        <  1:48674780/65‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGC        <  1:57886604/65‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGC        <  1:8720680/65‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGC        <  1:43879931/65‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGC        <  1:57289168/65‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGC        <  1:14663354/65‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGC        <  1:9486529/65‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGC        <  1:27864780/65‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGC        <  1:16653585/65‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGC        <  1:24117082/65‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGC        <  1:25516875/65‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGC        <  1:26855174/65‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGC        <  1:32027241/65‑1

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:31856309/1‑63

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:36449957/1‑63

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:5600328/1‑63

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:49749574/1‑63

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:13471795/1‑63

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:25842520/1‑63

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:34054455/1‑63

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:41061754/1‑63

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:16943326/1‑63

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATC          >  1:15892246/1‑63

                                                                      GCGCGGGTATCCATTTCACTGACAAAACCTTCGGTAGCAGCATAGACTGCTTTCGTCAGCATCGC        <  1:14108780/65‑1

                                                                        GCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCG   <  1:10032770/68‑1

                                                                        GCGGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTC    <  1:13360673/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:21421900/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:25646028/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:26970716/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:53438333/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:10662977/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:9348239/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:55804070/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:57329924/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:50947901/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:6848481/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:31153426/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:36878350/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:38595586/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:35518686/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:14651141/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:4251866/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:33969861/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:32422324/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:12099577/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:27968293/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:50363320/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:50675442/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:51247462/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:30499680/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:29614348/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  1:52780735/67‑1

                                                                          GGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGGCAGCATCGCTGTCGG  <  1:56043193/67‑1

TTGATGTCACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4608863‑4608937

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcgcgGGTATCCATTTCACTGACAAAACCTTCGGTATCAGCATAGACTGCTTTCGTCAGCATCGCTGTCGG  <  CP009273/4609113‑4609048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.