| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4608937 | 812 (1.160) | 4 (0.010) | 4/96 | NT | 0.58% | coding (892/1323 nt) | deoA | thymidine phosphorylase |
| ? | CP009273 | = 4609113 | 668 (1.110) | coding (1068/1323 nt) | deoA | thymidine phosphorylase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 1015 total aligned reads displayed.
TGCCGACAGCGATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCATCGATT > CP009273/4609046‑4609180 | ccGACAGCGATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCc < 1:32211679‑M2/67‑2 (MQ=255) ccGACAGCGATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCc < 1:10711636‑M2/67‑2 (MQ=255) ccGACAGCGATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCc < 1:57329924‑M2/67‑2 (MQ=255) ccGACAGCGATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCc < 1:12099577‑M2/67‑2 (MQ=255) ccGACAGCGATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCc < 1:30512975‑M2/67‑2 (MQ=255) ccGACAGCGATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCc < 1:51247462‑M2/67‑2 (MQ=255) ccGACAGCGATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCc < 1:50947901‑M2/67‑2 (MQ=255) cGACAGCGATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCcg > 1:31413633‑M2/1‑65 (MQ=255) aCAGCGATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCcgcgc < 1:32914613‑M2/68‑6 (MQ=255) aCAGCGATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCcgcgc < 1:2335685‑M2/68‑6 (MQ=255) gCGATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCcgcgc < 1:27864780‑M2/65‑6 (MQ=255) gCGATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCcgcgc < 1:38242591‑M2/65‑6 (MQ=255) gCGATGCTGACGAAAGAAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCcgcgc < 1:35690913‑M2/65‑6 (MQ=255) gATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCcgcgcgct > 1:45179000‑M2/1‑58 (MQ=255) gATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCcgcgcg > 1:19014316‑M2/1‑58 (MQ=255) gATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCcgcgcg > 1:27436858‑M2/1‑58 (MQ=255) gATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCcgcgcg > 1:43758633‑M2/1‑58 (MQ=255) gATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCcgcgc > 1:49749574‑M2/1‑58 (MQ=255) gATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTgg < 1:37798416/68‑1 (MQ=255) gATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTgg < 1:32498052/68‑1 (MQ=255) gATGCTGACGAAAGAAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCcgcgcg > 1:53243341‑M2/1‑58 (MQ=255) cGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCa > 1:52357626/1‑68 (MQ=255) aaGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTg < 1:47499503/68‑1 (MQ=255) aaGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTg < 1:28301549/68‑1 (MQ=255) aaGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTg < 1:21976705/68‑1 (MQ=255) aGCAGTCTATGCTGATACCGGAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTgg < 1:26932116/68‑1 (MQ=255) aGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAgggg < 1:29777817/68‑1 (MQ=255) gCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGt > 1:24451535/1‑68 (MQ=255) gCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGt > 1:53811925/1‑68 (MQ=255) aGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGtt > 1:1628775/1‑67 (MQ=255) aGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGt < 1:1398947/66‑1 (MQ=255) aGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGt < 1:55267936/66‑1 (MQ=255) aGTCTATGCTGATACAGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGtt > 1:25730532/1‑67 (MQ=255) tCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCa > 1:42568066/1‑68 (MQ=255) cTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGc < 1:26569951/66‑1 (MQ=255) cTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCaa > 1:20529014/1‑68 (MQ=255) aTGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATg < 1:30913228/68‑1 (MQ=255) tGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATgg > 1:24036824/1‑68 (MQ=255) tGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATgg > 1:42143689/1‑68 (MQ=255) tGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATgg > 1:53467936/1‑68 (MQ=255) gCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATgg > 1:9592322/1‑67 (MQ=255) gCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATgg > 1:431405/1‑67 (MQ=255) gCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATgg > 1:8244218/1‑67 (MQ=255) gCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATgg > 1:26180680/1‑67 (MQ=255) cTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGggc > 1:38958846/1‑68 (MQ=255) cTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGggc > 1:46851358/1‑68 (MQ=255) cTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGggc > 1:18435704/1‑68 (MQ=255) cTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGggc > 1:20044830/1‑68 (MQ=255) cTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGggc > 1:21298409/1‑68 (MQ=255) cTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGggc > 1:2279349/1‑68 (MQ=255) cTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGggc > 1:56762390/1‑68 (MQ=255) cTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGggc > 1:39631327/1‑68 (MQ=255) cTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGggc > 1:23662078/1‑68 (MQ=255) cTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGggc > 1:36664028/1‑68 (MQ=255) cTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGggc > 1:10423235/1‑68 (MQ=255) cTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGggc > 1:25350307/1‑68 (MQ=255) cTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGggc > 1:37262422/1‑68 (MQ=255) cTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGggc > 1:35369682/1‑68 (MQ=255) cTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGggc > 1:7142908/1‑68 (MQ=255) cTGATACCGAAGGTTTTGTCAGTGAAATGGATACCAGCGCTCTGGGGATGGCAGTGGTTGCAATGggc > 1:3603242/1‑68 (MQ=255) tACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGgcggcg > 1:44783072/1‑68 (MQ=255) tACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGgcggcg > 1:55808767/1‑68 (MQ=255) tACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGgcggcg > 1:14719497/1‑68 (MQ=255) tACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGgcggcg > 1:34897219/1‑68 (MQ=255) aCCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGcggcgg > 1:13153171/1‑68 (MQ=255) aCCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGcggcgg > 1:8888315/1‑68 (MQ=255) aCCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGcggcgg > 1:6459823/1‑68 (MQ=255) aCCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGcggcgg > 1:24966232/1‑68 (MQ=255) gTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCg > 1:1671840/1‑67 (MQ=255) gTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGc < 1:10012385/68‑1 (MQ=255) tCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCa > 1:17217172/1‑68 (MQ=255) cAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCAt < 1:46261977/68‑1 (MQ=255) cAGTGAAATGGATACCCGCGCGCGGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCAt < 1:57969119/68‑1 (MQ=255) aGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCAt < 1:8697884/67‑1 (MQ=255) gtaaTGGATACCCGCGCGCTGGGGATGGCAGGGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTg < 1:52852847/65‑1 (MQ=255) gAAATCGATCCCCGCGCGCTGGGGATGGCAGTGGTGGCAATGGGCGGCGGACGCCGTCAGGCAt < 1:41140044/64‑1 (MQ=255) aTGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGaca > 1:44210840/1‑67 (MQ=255) tGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACAcc < 1:19588562/68‑1 (MQ=255) tGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACAcc < 1:40690032/68‑1 (MQ=255) ggATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCa > 1:4809816/1‑68 (MQ=255) ggATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCa > 1:29095746/1‑68 (MQ=255) ggATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCa > 1:12777529/1‑68 (MQ=255) gATCCCCCCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCAt < 1:17710504/68‑1 (MQ=255) aTACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCAt < 1:56388823/67‑1 (MQ=255) aTACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCAt < 1:21659597/67‑1 (MQ=255) aTACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCAt < 1:11801284/67‑1 (MQ=255) aTACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCAt < 1:51779972/67‑1 (MQ=255) aTACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCAt < 1:48718267/67‑1 (MQ=255) tACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCATCg < 1:54562472/68‑1 (MQ=255) tACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGGCAGGCATCTGACACCATCg < 1:1580496/68‑1 (MQ=255) aCCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGCCACCATCGa > 1:40263623/1‑68 (MQ=255) aCCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCATCGa > 1:34302329/1‑68 (MQ=255) aCCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCATCGa > 1:31969948/1‑68 (MQ=255) cccGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCATCGAt > 1:41688297/1‑68 (MQ=255) cccGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCATCGAt > 1:15275157/1‑68 (MQ=255) cccGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCATCGAt > 1:6104130/1‑68 (MQ=255) cccGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCATCGAt > 1:7577482/1‑68 (MQ=255) cccGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCATCGAt > 1:33673566/1‑68 (MQ=255) cccGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCATCGAt > 1:50318/1‑68 (MQ=255) cccGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCATCGAt > 1:4928386/1‑68 (MQ=255) | TGCCGACAGCGATGCTGACGAAAGCAGTCTATGCTGATACCGAAGGTTTTGTCAGTGAAATGGATACCCGCGCGCTGGGGATGGCAGTGGTTGCAATGGGCGGCGGACGCCGTCAGGCATCTGACACCATCGATT > CP009273/4609046‑4609180 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |