New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 4608937812 (1.160)4 (0.010) 4/96 NT 0.58% coding (892/1323 nt) deoA thymidine phosphorylase
?CP009273 = 4609113 668 (1.110)coding (1068/1323 nt) deoA thymidine phosphorylase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 999 total aligned reads displayed.

CACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGTCGTATGGTAGCGGCACA  >  CP009273/4608870‑4609004
                                                                   |                                                                   
cACGATGGCGCTGGGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCG                                                                     <  1:32179095‑M1/68‑1 (MQ=255)
   gATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGa                                                                  >  1:28914286/1‑68 (MQ=255)
    aTGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGaa                                                                 >  1:4685149/1‑68 (MQ=255)
      ggCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAAt                                                               <  1:48967220/68‑1 (MQ=255)
       gcgcTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAAtt                                                              >  1:10495002/1‑68 (MQ=255)
       gcgcTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAAtt                                                              >  1:36794923/1‑68 (MQ=255)
       gcgcTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAAtt                                                              >  1:35276331/1‑68 (MQ=255)
       gcgcTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAAtt                                                              >  1:23714454/1‑68 (MQ=255)
         gcTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGCCGCCGAAGCGCGCGCGAAATTGc                                                            >  1:9690641/1‑68 (MQ=255)
             tgCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGc                                                        >  1:13745734/1‑68 (MQ=255)
              gCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGCCGCCGAAGCGCGCGCGAAATTGCAGGCg                                                       >  1:56638563/1‑68 (MQ=255)
                ttGGAGATGCAGATCACCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:32426423/67‑1 (MQ=255)
                ggggAGATGCGGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:29548398/66‑1 (MQ=255)
                gTGGAGTTGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:4369012/68‑1 (MQ=255)
                gTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACTCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:43369605/68‑1 (MQ=255)
                gTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:11254904/68‑1 (MQ=255)
                gTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:41580517/68‑1 (MQ=255)
                gTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:42109855/68‑1 (MQ=255)
                gTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:27629485/68‑1 (MQ=255)
                gTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:27343724/68‑1 (MQ=255)
                gTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:425877/68‑1 (MQ=255)
                gTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:25733618/68‑1 (MQ=255)
                gTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:24335248/68‑1 (MQ=255)
                gTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:39079215/68‑1 (MQ=255)
                gTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:21100527/68‑1 (MQ=255)
                gTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:37901726/68‑1 (MQ=255)
                gTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:13012894/68‑1 (MQ=255)
                gTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:11775771/68‑1 (MQ=255)
                gTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     <  1:35638165/68‑1 (MQ=255)
                  ggAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGc                                                   <  1:4647761/68‑1 (MQ=255)
                  ggAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGc                                                   <  1:55565215/68‑1 (MQ=255)
                   gagaTGCTGATCTCCGGCAAACTGGCGAAAGATGCCGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     >  1:1611920/1‑65 (MQ=255)
                   gagaTGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     >  1:55810285/1‑65 (MQ=255)
                   gagaTGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     >  1:38619932/1‑65 (MQ=255)
                   gagaTGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     >  1:37443752/1‑65 (MQ=255)
                   gagaTGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     >  1:31990182/1‑65 (MQ=255)
                   gagaTGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     >  1:7688459/1‑65 (MQ=255)
                   gagaTGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     >  1:52346656/1‑65 (MQ=255)
                   gagaTGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGt                                                     >  1:14965538/1‑65 (MQ=255)
                     gaTGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTgg                                                <  1:45606763/68‑1 (MQ=255)
                     gaTGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTgg                                                >  1:50315926/1‑68 (MQ=255)
                     gaTGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTgg                                                >  1:57604436/1‑68 (MQ=255)
                       tGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTgg                                                <  1:55165830/66‑1 (MQ=255)
                        gCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACa                                             >  1:5370358/1‑68 (MQ=255)
                        gCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACa                                             <  1:6516009/68‑1 (MQ=255)
                         cTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACa                                             >  1:5612187/1‑67 (MQ=255)
                          tGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAAc                                           <  1:8902415/68‑1 (MQ=255)
                          tGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAAc                                           >  1:17247717/1‑68 (MQ=255)
                          tGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAAc                                           <  1:33013838/68‑1 (MQ=255)
                           gATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACg                                          <  1:41049510/68‑1 (MQ=255)
                             tctcCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGt                                        >  1:33748199/1‑68 (MQ=255)
                              ctcCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTa                                       >  1:48674452/1‑68 (MQ=255)
                                  ggCGAACTGGCGAAAGATGCCGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGc                                   >  1:23179029/1‑68 (MQ=255)
                                  ggCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGc                                   >  1:3078750/1‑68 (MQ=255)
                                  ggCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGc                                   >  1:49570763/1‑68 (MQ=255)
                                     aaaCTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGc                                >  1:22566166/1‑68 (MQ=255)
                                     aaaCTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGc                                <  1:1077919/68‑1 (MQ=255)
                                     aaaCTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGc                                <  1:40004831/68‑1 (MQ=255)
                                       aCTGCCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGAAAACGGTACAGCGGCAg                              >  1:45132503/1‑68 (MQ=255)
                                          ggCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAg                           <  1:19921280/68‑1 (MQ=255)
                                            cGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGt                          <  1:18007953/67‑1 (MQ=255)
                                            cGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGt                          <  1:54128638/67‑1 (MQ=255)
                                            cGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGt                          <  1:15577129/67‑1 (MQ=255)
                                            cGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGt                          <  1:5995631/67‑1 (MQ=255)
                                            cGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGt                          <  1:33460653/67‑1 (MQ=255)
                                            cGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGt                          <  1:36414488/67‑1 (MQ=255)
                                            cGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGt                          <  1:3040949/67‑1 (MQ=255)
                                            cGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGt                          <  1:30060327/67‑1 (MQ=255)
                                            cGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGt                          <  1:13426666/67‑1 (MQ=255)
                                            cGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGt                          <  1:40602548/67‑1 (MQ=255)
                                             gAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCt                        <  1:51738384/68‑1 (MQ=255)
                                               aaGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCttt                      >  1:19396610/1‑68 (MQ=255)
                                                aGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTg                     <  1:12610049/68‑1 (MQ=255)
                                                 gATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTgg                    >  1:2618308/1‑68 (MQ=255)
                                                   tGACGCCGACGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGt                   <  1:16738495/67‑1 (MQ=255)
                                                   tGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGt                   <  1:20746983/67‑1 (MQ=255)
                                                   tGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGt                   <  1:31591385/67‑1 (MQ=255)
                                                   tGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGTc                  <  1:44201956/68‑1 (MQ=255)
                                                      cGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGTCGt                <  1:48370832/67‑1 (MQ=255)
                                                      cGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGTCGt                <  1:21725316/67‑1 (MQ=255)
                                                      cGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGTCGt                <  1:46117843/67‑1 (MQ=255)
                                                      cGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGTCGt                <  1:24102371/67‑1 (MQ=255)
                                                         cGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGTCGTATg             <  1:38270809/67‑1 (MQ=255)
                                                            aGCGCGCGggtatccatttcactgacaaaaccttcggtatcagcatagactgctttcgtcagcatc           >  1:28256308‑M1/1‑8 (MQ=255)
                                                            aGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGTCGTATGGTa          >  1:47370918/1‑67 (MQ=255)
                                                            aGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGTCGTATGGTa          >  1:8318697/1‑67 (MQ=255)
                                                            aGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGTCGTATGGTa          >  1:43027887/1‑67 (MQ=255)
                                                              cgcgcgggtatccatttcactgacaaaaccttcggtatcagcatagactgctttcgtcagcatc           >  1:25261965‑M1/1‑6 (MQ=255)
                                                              cgcgcgcgAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGTCGTATGGTAGCg       >  1:14573797/1‑68 (MQ=255)
                                                              cgcgcgcgAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGTCGTATGGTAGCg       >  1:26736121/1‑68 (MQ=255)
                                                              cgcgcgcgAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGTCGTATGGTAGCg       >  1:1876293/1‑68 (MQ=255)
                                                               gcgcgggtatccatttcactgacaaaaccttcggtatcagcatagactgctttcgtcagcatcgc         <  1:5299623‑M1/65‑61 (MQ=255)
                                                               gcgcgggtatccatttcactgacaaaaccttcggtatcagcatagactgctttcgtcagcatcgc         <  1:50963019‑M1/65‑61 (MQ=255)
                                                               gcgcgggtatccatttcactgacaaaaccttcggtatcagcatagactgctttcgtcagcatc           >  1:53404121‑M1/1‑5 (MQ=255)
                                                               gcgcgggtatccatttcactgacaaaaccttcggtagcagcatagactgctttcgtcagcatcgc         <  1:14108780‑M1/65‑61 (MQ=255)
                                                                 gcgggtatccatttcactgacaaaaccttcggtatcagcatagactgctttcgtcagcatcgctgtcg    <  1:10032770‑M1/68‑66 (MQ=255)
                                                                 gcgcgAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGTCGTATGGTAGCGGc     <  1:34083864/67‑1 (MQ=255)
                                                                   gggtatccatttcactgacaaaaccttcggtatcagcatagactgctttcgtcagcatcgctgtcgg   <  1:34464708‑M1/67‑67 (MQ=255)
                                                                   gggtatccatttcactgacaaaaccttcggtatcagcatagactgctttcgtcagcatcgctgtcgg   <  1:7192455‑M1/67‑67 (MQ=255)
                                                                   gggtatcaatttcactgacaaaaccttcggtatcagcatagactgctttcgtcagcatcgctgtcgg   <  1:57307083‑M1/67‑67 (MQ=255)
                                                                   |                                                                   
CACGATGGCGCTGTGCGTGGAGATGCTGATCTCCGGCAAACTGGCGAAAGATGACGCCGAAGCGCGCGCGAAATTGCAGGCGGTGCTGGACAACGGTAAAGCGGCAGAAGTCTTTGGTCGTATGGTAGCGGCACA  >  CP009273/4608870‑4609004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.