| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 442673 = | 593 (0.850) | 45 (0.080) | 12/90 | NT | 6.9% | coding (489/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | 442734 = | 738 (1.310) | coding (428/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
Only 100 of 250 total aligned reads displayed.
TTGGTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/442749‑442673‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA > CP009273/442734‑442800 TTGGTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGC > 1:30111823/1‑68TTGGTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGC < 1:26475596/68‑1TTGGTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGC < 1:49792168/68‑1TTGGTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGC < 1:23900259/68‑1TTGGTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGC > 1:8923616/1‑68TTGGTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGC > 1:15669408/1‑68TTGGTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGC < 1:14482595/68‑1 TGGTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG > 1:54809441/1‑68 GGTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGG < 1:3039171/68‑1 GGTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG > 1:44344833/1‑67 GGTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG > 1:53022908/1‑67 GGTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG > 1:247619/1‑67 GGTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG > 1:18007544/1‑67 GGTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG > 1:43885305/1‑67 GTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGC > 1:42460170/1‑68 TTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGC < 1:57461465/67‑1 TTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGC < 1:26186555/67‑1 TTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGC < 1:12864350/67‑1 TTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGC < 1:22390898/67‑1 TCGCTCTCCGGCGCTGCGCCGCCTGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGC > 1:16120861/1‑68 TCGCTCTCCGGCGCTGCGCCGCCGGTGATCTGCTACTGTGCGGTAACCGGAGAGTTCGATAGCGGCGC > 1:56371757/1‑68 TCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGC < 1:2210709/68‑1 TCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGC > 1:53320918/1‑68 TCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGC > 1:16632108/1‑68 TCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGC > 1:25928836/1‑68 TCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGC > 1:30952860/1‑68 TCGCTCACCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGC > 1:56191301/1‑68 CGCTCTCCGGCGCTGCGCCGCCGGTGTTCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCA < 1:48520919/68‑1 CGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCA < 1:20536516/68‑1 CGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCA < 1:27788760/68‑1 CGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCA < 1:51198993/68‑1 CGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCA < 1:12617952/68‑1 CGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCA < 1:12969965/68‑1 gCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGC < 1:54453301/66‑1 TCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCG > 1:7118506/1‑68 TCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCG > 1:41037861/1‑68 TCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCG < 1:11223460/68‑1 TCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCG > 1:10912692/1‑68 TCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCG > 1:31960925/1‑68 TCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCG > 1:45647938/1‑68 TCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCG > 1:31302542/1‑68 TCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGC < 1:45574652/67‑1 TCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGC < 1:16316700/67‑1 TCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGC < 1:5742694/67‑1 TCTCCCGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGC < 1:19942646/67‑1 TCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGCC < 1:9403498/68‑1 TCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGCC < 1:11568377/68‑1 TCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGC < 1:22946688/67‑1 GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGCCGGAGAGCGA < 1:31729458/68‑1 GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGCCGGAGAGCGA < 1:26579893/68‑1 CGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTGCGATAGCGGCGCAGCGCCGGAGAGCGA < 1:37596362/67‑1 CGCCGGTGATCGGCTACTGTGCGGTAACCGGGGAGTTCGAGAGCGGCGCAGCGCCGGAGAGCGAACC < 1:24483648/67‑1 CGCCGGTGATCGGCTACTGTCCGGTAACCGGTGAGGTCGATAGCGGCGCAGCGCCGGAGAGCGAACC < 1:3535876/67‑1 CGCCGGTGATCGGCTACTGCGCCGTAACCGGTGAGTCCGATAGCGGCGCAGCGCCGGAGAGCGAACC < 1:50138120/67‑1 CGCCGGTGACCGGCAACTGGGCGGTAACCGGGGAGTGCGATAGCGGCGCAGCGCCGGAGAGCGAACCA < 1:57165026/68‑1 CGGCTCCTGGCCGGTAACCGGTGAGTTCCACAGCGCCGCAGCGCCGGAGAGCGAACCAATCAACGTGC < 1:53768453/68‑1 CGGCTCCTCGGCGGTCACCGGTGAGTGCGATAGCGGCGCTGCGCCGGAGAGCGAACCAATCAACGTGC < 1:39351590/68‑1 CGGCTACTGGGCGGTCACCGGTGAGATCGATCGCGCCGCCGCGCCGGAGAGCGAACCAATCAACGTGC < 1:29728737/68‑1 CGGCTACTGGGCGGTACCCGGGGCGGCCGATAGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGC < 1:44622772/68‑1 CGGCTACTGAGCGGCAACCGGTGAGTCCGATAGCGCCGCAGCGCCGGAGAGCGAACCAATCAACGTGC < 1:47590754/68‑1 GGCTACAGGCCGGTAACCGGGGAGTTCGATAGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGC < 1:39854953/67‑1 ctcCTGTGCGGTAACCGGGGAGTTCGATAGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCG < 1:41967309/64‑1 ACTGCGCGGTAACCGGTGAGTTCGAAAGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAG < 1:44234093/68‑1 gggGAGTTCGATAGCGCCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTT < 1:10949267/65‑1 ggcGAGTGCGATAGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTT < 1:34610051/65‑1 cctGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGG < 1:42222599/65‑1 accGCGGCGCCCCGCCGGAGAGCGAACCAATCAACGTGCCGAAGACAGAGTGGCGTTTCATGTACAGG < 1:33101669/65‑1 TAGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGG < 1:2925188/67‑1 ccCGGCCCAGCCCCGGCGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCT < 1:23367291/66‑1 GCGGCGCAGCGCCGGAGAGCGACCCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTA > 1:27061141/1‑68 GCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGTCAGAGTGGCGTTTCATGTACAGGCTA > 1:32510137/1‑68 GCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACTGAGTGGCGTTTCATGTCCAGGCTA > 1:13382080/1‑68 GCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTA > 1:40734833/1‑68 GCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTA > 1:33643215/1‑68 GCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGGACAGGCTA > 1:54215013/1‑68 CGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTA < 1:43530611/67‑1 CGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTA < 1:42601276/67‑1 CGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTA < 1:46897462/67‑1 CGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTA < 1:38381563/67‑1 CGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTA < 1:10193173/67‑1 CGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTA < 1:7902076/67‑1 GGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATA < 1:27214987/68‑1 GGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTA < 1:37122555/66‑1 GGCGCAGCGCCGGAGAGCGAACCAATAAACGTGCAGTAGACAGAGTGGCGTTTCATGTACAGGCTATA > 1:19072521/1‑68 GCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAA > 1:50791324/1‑68 GCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAAC < 1:25343676/68‑1 GCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAA < 1:57257677/67‑1 AGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACG < 1:14008683/67‑1 AGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACG < 1:5395828/67‑1 AGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACG > 1:24292528/1‑67 AGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACG < 1:44899881/67‑1 GCCGGCGAGCGAACCAATCAACGTGCCGTAGACCGAGTGGCGTTTCATGTACAGGCTATAACCGCCGA < 1:55041065/68‑1 GCCGGAGAGCGAACCTATCATCGTGCCGTAGACAGAGTGGCGTTTCATTTACAGGCTATAAACGCCGA < 1:10540995/68‑1 GCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA < 1:21516427/68‑1 GCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA < 1:2093891/68‑1 GCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA < 1:25001282/68‑1 GCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA < 1:18479743/68‑1 GCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA < 1:14181323/68‑1 GCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA < 1:28546815/68‑1 GCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCC < 1:49582848/66‑1 TTGGTTCGCTCTCCGGCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/442749‑442673‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA > CP009273/442734‑442800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |