New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 442673 =593 (0.850)45 (0.080) 12/90 NT 6.9% coding (489/891 nt) cyoE protoheme IX farnesyltransferase
?CP009273 442734 = 738 (1.310)coding (428/891 nt) cyoE protoheme IX farnesyltransferase

Only 100 of 1098 total aligned reads displayed.

TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGA  >  CP009273/442606‑442740
                                                                   |                                                                   
tcggcgtttatagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggc                                                                     <  1:2093891‑M1/1‑1 (MQ=255)
  ggcgtttatagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggc                                                                     <  1:49582848‑M1/1‑1 (MQ=255)
  ggcgtttatagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggc                                                                     <  1:56228164‑M1/1‑1 (MQ=255)
   aGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     >  1:19173556‑M1/1‑65 (MQ=255)
   aGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     >  1:50207545‑M1/1‑65 (MQ=255)
   aGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     >  1:51072546‑M1/1‑65 (MQ=255)
   aGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     >  1:2223048‑M1/1‑65 (MQ=255)
    gCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                  >  1:19765995‑M1/1‑67 (MQ=255)
    cgtttatagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCt                                                                  <  1:3062241‑M1/4‑1 (MQ=255)
    cgtttatagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCt                                                                  <  1:14008683‑M1/4‑1 (MQ=255)
         aaaTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCC                                                             <  1:23096412‑M1/67‑1 (MQ=255)
         aaaTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCC                                                             <  1:11446254‑M1/67‑1 (MQ=255)
          tagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCTGcgccgc                                                           >  1:40734833‑M1/58‑68 (MQ=255)
          tagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCTGcgccgc                                                           >  1:39184403‑M1/58‑68 (MQ=255)
          tagcctgtacatgaaacgccactctgtctacggcacgttgattgggtcgctctccggCGCTGcgccgc                                                           >  1:27061141‑M1/58‑68 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:13765259/68‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:18589655/68‑1 (MQ=255)
             ggCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTAt                                                        <  1:21303390/68‑1 (MQ=255)
             cctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCTGCGCCGCTa                                                         <  1:2925188‑M1/13‑1 (MQ=255)
              gCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATc                                                       >  1:25090862/1‑68 (MQ=255)
                      aTAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCAc                                               <  1:44250829/68‑1 (MQ=255)
                      aTAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCAc                                               <  1:8433138/68‑1 (MQ=255)
                       aaacgccactctgtctacggcacgttgattggttcgctctccggCGCTGCGCCGCTTTCGAGCGCAcc                                              <  1:9206031‑M1/24‑1 (MQ=255)
                        aGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCg                                             <  1:31907289/68‑1 (MQ=255)
                         ggAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgg                                            >  1:16745398/1‑68 (MQ=255)
                         ggAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgg                                            >  1:48990264/1‑68 (MQ=255)
                          gAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCTCTGCGCCGCTATCGAACTCACCGGt                                           >  1:34884622/1‑68 (MQ=255)
                          gAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGt                                           >  1:51837983/1‑68 (MQ=255)
                          gAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGt                                           >  1:55730796/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgg                                            <  1:47910548/66‑1 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgg                                            <  1:5292112/66‑1 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgg                                            <  1:11963977/66‑1 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:9659173/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:33091244/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:41126205/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:5510785/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:41700219/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:54755187/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:27689389/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:13280665/1‑68 (MQ=255)
                           aGTGAGGCATCTGCAACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATAGAACTCACCGGtt                                          >  1:28825902/1‑68 (MQ=255)
                            gggAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          <  1:5352534/65‑1 (MQ=255)
                            gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          <  1:33528042/67‑1 (MQ=255)
                              gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc                                       <  1:47054408/68‑1 (MQ=255)
                              gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc                                       <  1:52280914/68‑1 (MQ=255)
                              gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc                                       <  1:46569686/68‑1 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:29936169/1‑68 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:35801139/1‑68 (MQ=255)
                                 gCATCTGCCCCAGGCTGAAGCTAGCCAGCAGGATCGCTGCGCCGATATCGACCTCACCGGTTACCGc                                     >  1:6215442/1‑67 (MQ=255)
                                 gCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:15533363/1‑67 (MQ=255)
                                  cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGca                                    <  1:7342228/67‑1 (MQ=255)
                                  cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGca                                    <  1:15880847/67‑1 (MQ=255)
                                  cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     <  1:36878838/66‑1 (MQ=255)
                                   aTCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcaca                                  >  1:25596217/1‑68 (MQ=255)
                                   aTCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcaca                                  >  1:21685036/1‑68 (MQ=255)
                                   aTCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcaca                                  <  1:10930387/68‑1 (MQ=255)
                                   aTCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcaca                                  >  1:2359471/1‑68 (MQ=255)
                                   aTCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcaca                                  <  1:40241009/68‑1 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGACCTCACCGGTTACCGCACAGt                                <  1:56487083/68‑1 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt                                <  1:35212148/68‑1 (MQ=255)
                                      tGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTa                               <  1:14533541/68‑1 (MQ=255)
                                       gCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggt                              >  1:20479048‑M1/1‑39 (MQ=255)
                                         cacaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGcc                            >  1:43586854/1‑68 (MQ=255)
                                         cacaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGcc                            >  1:46078075/1‑68 (MQ=255)
                                          acaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgag                           >  1:34304084‑M1/1‑36 (MQ=255)
                                          acaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCg                           >  1:39765419/1‑68 (MQ=255)
                                          acaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCg                           >  1:10626010/1‑68 (MQ=255)
                                            aGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGa                          >  1:24175390/1‑67 (MQ=255)
                                              gCTGAAGATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcg                       >  1:43007660‑M1/1‑32 (MQ=255)
                                              gCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATc                        >  1:45172823/1‑67 (MQ=255)
                                              gCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATc                        >  1:16280610/1‑67 (MQ=255)
                                              gCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACAGCACAGTAGCCGATc                        >  1:7858212/1‑67 (MQ=255)
                                               cTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGa                          <  1:15034732/64‑1 (MQ=255)
                                               cTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGa                          <  1:32225302/64‑1 (MQ=255)
                                               cTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGAt                         <  1:10079514/65‑1 (MQ=255)
                                               cTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCa                       >  1:18258324/1‑67 (MQ=255)
                                                   aGATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagc                  >  1:22648808‑M1/1‑27 (MQ=255)
                                                   aGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgc                  >  1:57232487‑M2/1‑66 (MQ=255)
                                                   aGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCAACGGTTACCGCACAGTAGCCGATCACCGgc                  <  1:38512423‑M2/68‑3 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggggagttcgatagcg                 >  1:3713064‑M1/1‑26 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:28060884‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:48374477‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:6655056‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:57709932‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:36328896‑M2/68‑4 (MQ=255)
                                                     ggttcgctctccggCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACcggcg                 <  1:54043762‑M1/53‑1 (MQ=255)
                                                      tAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggc               >  1:17732337‑M2/1‑63 (MQ=255)
                                                        tcgctctccggCGCTGCGCCGCTATCGCACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcg              <  1:37596362‑M1/56‑1 (MQ=255)
                                                        tcgctctccggCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGgcgc             <  1:26579893‑M1/57‑1 (MQ=255)
                                                          cagcagGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgca            >  1:12749674‑M2/1‑59 (MQ=255)
                                                          cagcagGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgca            >  1:34589587‑M2/1‑59 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:30244990‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc        <  1:12373773/67‑1 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc        <  1:26303305/67‑1 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc       >  1:24635240/1‑68 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc       >  1:8811126/1‑68 (MQ=255)
                                                                 aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGga    >  1:44795971/1‑68 (MQ=255)
                                                                  gCGCTGCGCCGCGATCGAGCTCACCGGTTCCCGCCCAGGAGCCGATCACCGGCGGCGCAGCGCcggg    <  1:42262759‑M1/66‑2 (MQ=255)
                                                                   CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga  >  1:45647938‑M1/1‑68 (MQ=255)
                                                                   CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga  >  1:31302542‑M1/1‑68 (MQ=255)
                                                                   |                                                                   
TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGA  >  CP009273/442606‑442740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.