New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 442673 =593 (0.850)45 (0.080) 12/90 NT 6.9% coding (489/891 nt) cyoE protoheme IX farnesyltransferase
?CP009273 442734 = 738 (1.310)coding (428/891 nt) cyoE protoheme IX farnesyltransferase

Only 100 of 1241 total aligned reads displayed.

CAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA  >  CP009273/442667‑442800
                                                                   |                                                                  
 tccggcgctgcgccgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgc                                                                    <  1:22946688‑M2/1‑1 (MQ=255)
  ccggCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCg                                                                  <  1:16042732‑M1/64‑1 (MQ=255)
    aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGGGCAGCGcc                                                                   <  1:34992654/65‑1 (MQ=255)
    aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGga                                                                >  1:37969514/1‑68 (MQ=255)
    aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGga                                                                >  1:14928721/1‑68 (MQ=255)
     tCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgag                                                               <  1:45545216/68‑1 (MQ=255)
       GCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              <  1:55337897‑M1/67‑1 (MQ=255)
          gcgccgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgCCGGAGAGCGa                                                          <  1:44198573‑M2/11‑1 (MQ=255)
          gcgccgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgCCGGAGAGCGa                                                          <  1:31729458‑M2/11‑1 (MQ=255)
          GCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGa                                                          >  1:29754644‑M1/1‑68 (MQ=255)
               gccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgCCGGAGAGCGAACCaa                                                     <  1:28770453‑M2/16‑1 (MQ=255)
               GCTATCGAACTCCCCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGACCCaa                                                     <  1:27551330‑M1/68‑1 (MQ=255)
               GCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCaa                                                     <  1:26475596‑M1/68‑1 (MQ=255)
               GCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCaa                                                     >  1:22529648‑M1/1‑68 (MQ=255)
               GCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCaa                                                     >  1:30111823‑M1/1‑68 (MQ=255)
               GCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCaa                                                     <  1:32327347‑M1/68‑1 (MQ=255)
                    cGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAAc                                                >  1:2942197/1‑68 (MQ=255)
                      aaCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:52397653/1‑68 (MQ=255)
                      aaCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:54509000/1‑68 (MQ=255)
                       aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGGGCCGGAGAGAGAACCAATCAAcct                                              >  1:13994640/1‑65 (MQ=255)
                       aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGCGCGAACCAATCAACGt                                              >  1:17872452/1‑67 (MQ=255)
                       aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:54108942/1‑67 (MQ=255)
                        cggctactgggcggtacccggggcggccgatagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGc                                            <  1:44622772‑M2/25‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGATAGCGAACCAATCAACGTGc                                            <  1:12353680/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:50307850/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:26931102/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:43654664/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:38374826/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:47138238/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:34662250/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:30903372/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:39095084/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:8331000/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:11391890/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:7047919/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:14417585/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:15665491/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:5897348/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:17333038/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:18565592/68‑1 (MQ=255)
                        cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:24841272/68‑1 (MQ=255)
                         tCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGcc                                           >  1:10947642/1‑68 (MQ=255)
                          cACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCg                                          <  1:6305980/68‑1 (MQ=255)
                           aCCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGt                                         <  1:53710819/68‑1 (MQ=255)
                            tactgtgcggcaaccggtgaggtcgatagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTa                                        <  1:13554568‑M2/29‑1 (MQ=255)
                             cGGTTACGGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:57646904/68‑1 (MQ=255)
                             cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       >  1:16725807/1‑68 (MQ=255)
                             cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:57325159/68‑1 (MQ=255)
                             cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:51705385/68‑1 (MQ=255)
                             cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:45847027/68‑1 (MQ=255)
                             cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:36733298/68‑1 (MQ=255)
                             cGGTTACCGCACAGTAGCCGATCACCGCCGGCGCAGCGCCGGAGAGCGCACCAATCAACGTGCCGTAg                                       >  1:48278234/1‑68 (MQ=255)
                                ttACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACa                                    >  1:48794874/1‑68 (MQ=255)
                                 tACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACag                                   <  1:42200501/68‑1 (MQ=255)
                                  aCCGCACAGTAGCCGATCACCGGCGGCGCCGCGCCGGAGAGCGAACCAATCCACGTGCCGTAGACaga                                  >  1:31211599/1‑68 (MQ=255)
                                   ccGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACagag                                 >  1:37377234/1‑68 (MQ=255)
                                    cGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGt                                <  1:894028/68‑1 (MQ=255)
                                     gCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:23445251/1‑68 (MQ=255)
                                      cacaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:21553352/1‑67 (MQ=255)
                                      cacaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:7381789/1‑67 (MQ=255)
                                       acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc                             >  1:46687855/1‑68 (MQ=255)
                                       acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc                             >  1:5292898/1‑68 (MQ=255)
                                       acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc                             >  1:9411094/1‑68 (MQ=255)
                                         aGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGt                           >  1:39790658/1‑68 (MQ=255)
                                            aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:13086626/67‑1 (MQ=255)
                                            aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:4162276/67‑1 (MQ=255)
                                            aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:16328921/67‑1 (MQ=255)
                                            aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:56293635/67‑1 (MQ=255)
                                               cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg                     <  1:20868181/68‑1 (MQ=255)
                                               cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg                     >  1:50953270/1‑68 (MQ=255)
                                               cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg                     >  1:10348700/1‑68 (MQ=255)
                                               cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg                     >  1:49443552/1‑68 (MQ=255)
                                                ggtcgaaagcggcgcaccgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg                     <  1:42598796‑M2/48‑1 (MQ=255)
                                                gATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    <  1:19448722/68‑1 (MQ=255)
                                                 aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCACCGTGCCGTAGACAGAGTGGCGTTTCATGt                    >  1:24100401/1‑67 (MQ=255)
                                                 aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATgg                    >  1:4117539/1‑66 (MQ=255)
                                                 aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    >  1:10620763/1‑67 (MQ=255)
                                                   cACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACa                 <  1:8050180/68‑1 (MQ=255)
                                                     ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:22088267/68‑1 (MQ=255)
                                                     ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:1274201/68‑1 (MQ=255)
                                                     ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:18951112/68‑1 (MQ=255)
                                                     ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:12009870/68‑1 (MQ=255)
                                                     ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:10045/68‑1 (MQ=255)
                                                     ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:56000965/68‑1 (MQ=255)
                                                     ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:45054156/68‑1 (MQ=255)
                                                     ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:47875608/68‑1 (MQ=255)
                                                     ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:24544842/68‑1 (MQ=255)
                                                     ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:25773838/68‑1 (MQ=255)
                                                     ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:36136292/68‑1 (MQ=255)
                                                     ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:28313369/68‑1 (MQ=255)
                                                     ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:50000440/68‑1 (MQ=255)
                                                     ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:34297660/68‑1 (MQ=255)
                                                     ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:33640778/68‑1 (MQ=255)
                                                     accgcggcgccccgCCGGAGAGCGAACCAATCAACGTGCCGAAGACAGAGTGGCGTTTCATGTACAgg               <  1:33101669‑M2/54‑1 (MQ=255)
                                                      cggcggCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGc              <  1:43085625/68‑1 (MQ=255)
                                                      cggcggCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGc              <  1:57073956/68‑1 (MQ=255)
                                                        gcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta            >  1:3552330‑M2/12‑68 (MQ=255)
                                                        gcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta            >  1:40734833‑M2/12‑68 (MQ=255)
                                                             gcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAAc       <  1:25343676‑M2/62‑1 (MQ=255)
                                                                  gCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGa  <  1:20280588‑M2/67‑1 (MQ=255)
                                                                   |                                                                  
CAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA  >  CP009273/442667‑442800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.