| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1182545 | NA (NA) | 10 (0.020) | 4/90 | NT | NA | noncoding (7/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 1182548 | NA (NA) | noncoding (10/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 278 total aligned reads displayed.
TGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1182468‑1182545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatgcggcatCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCACCT < CP009273/1182548‑1182483 TGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGG < 1:40783907/68‑1TGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGG < 1:25737153/68‑1TGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGG < 1:35643411/68‑1TGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGG < 1:22771840/68‑1TGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGG < 1:4264654/68‑1TGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGG < 1:19587584/68‑1 GGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGG < 1:9283072/68‑1 GGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGG < 1:52342301/68‑1 GGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGG < 1:5271592/68‑1 GGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGG < 1:34365413/68‑1 GGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGG < 1:54087528/68‑1 GAAAACGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGG < 1:9512364/67‑1 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:10324407/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:49694658/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:5663732/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:29830821/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:32243417/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:12570644/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:36504732/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:69214/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:38382845/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:51957730/1‑68 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATG < 1:21631511/68‑1 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:37707032/1‑67 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:11820161/1‑67 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:41400784/1‑67 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:13481263/1‑67 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:28265400/1‑67 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:17325725/1‑67 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:4953126/1‑67 AAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGC < 1:39433146/68‑1 AAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCG < 1:5133934/68‑1 AAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCG > 1:27540470/1‑68 AAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCG < 1:21899353/68‑1 AAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCG < 1:23470300/68‑1 AAGCGGTGCAGGTGAGCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCG < 1:17595594/68‑1 AGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGG < 1:31034639/68‑1 AGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGG < 1:54614518/68‑1 AGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGG < 1:32362134/68‑1 AGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGG < 1:22942185/68‑1 AGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCG > 1:4910935/1‑67 GCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC > 1:24775130/1‑68 GCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC > 1:50174782/1‑68 GCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC > 1:37278694/1‑68 GCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC > 1:55484105/1‑68 GCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC > 1:43840093/1‑68 GCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC > 1:23765265/1‑68 GCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC > 1:16665878/1‑68 GCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC > 1:6221293/1‑68 GCGGGGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:45600686/68‑1 CGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCA > 1:20042718/1‑68 CGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCA > 1:33581602/1‑68 CGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCA > 1:46080942/1‑68 cGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:14456840/65‑1 GGTGCAGGTTATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:41957360/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAT < 1:18058384/68‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAT < 1:39824949/68‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAT < 1:47532370/68‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAT < 1:7492831/68‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:7819379/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:38783762/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:9017682/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:31989295/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:50061655/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:57934970/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:25998130/66‑1 TGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCG > 1:4492761/1‑56 GCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTT > 1:21779654/1‑67 GCGAAAAGGGATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGC > 1:55537608/1‑68 GGGATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGG > 1:46624719/1‑68 GGATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGA < 1:18799331/68‑1 GGATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGA < 1:29304814/68‑1 ATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGAC < 1:26775550/67‑1 ATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGAC < 1:46485986/67‑1 ATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGAC < 1:4535264/67‑1 ATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGAC < 1:22646172/67‑1 ATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGAC < 1:3330584/67‑1 ATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGAC < 1:55140958/67‑1 TGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGA < 1:28833911/68‑1 GCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGAT < 1:11230531/68‑1 GCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGAT < 1:4441547/68‑1 GCGGCATCACATGCCGCATCCCTTATCGCTTACATCCGTTGCGCCGTTAACTCGGCAATACGGACGAT < 1:15034575/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTGCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:30169557/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:48449530/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:13396869/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:19683749/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:20633182/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:23530276/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:24343467/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:57644089/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:25078939/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:25251151/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:31637990/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:35523948/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:48801770/68‑1 GCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA > 1:57749132/1‑67 GCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA > 1:22329261/1‑67 CATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA > 1:3080255/1‑66 CATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA > 1:8027457/1‑66 ATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA > 1:21314036/1‑65 TGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1182468‑1182545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatgcggcatCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCACCT < CP009273/1182548‑1182483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |