| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1182545 | NA (NA) | 10 (0.020) | 4/90 | NT | NA | noncoding (7/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 1182548 | NA (NA) | noncoding (10/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 626 total aligned reads displayed.
GCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCG > CP009273/1182481‑1182615 | tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:25251151‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:57644089‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:21848946‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:22327224‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:40371849‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:25847470‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:13701632‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:13396869‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:55399996‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:35523948‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGCAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:30169557‑M2/68‑6 (MQ=255) aTCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgccgc < 1:30776528‑M2/68‑8 (MQ=255) aTCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgccgc < 1:45348980‑M2/68‑8 (MQ=255) aTCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgccgc < 1:4441547‑M2/68‑8 (MQ=255) aTCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgccgc < 1:49337691‑M2/68‑8 (MQ=255) tCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgccgca < 1:28833911‑M2/68‑9 (MQ=255) tCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgccgcatcc < 1:18799331‑M2/68‑12 (MQ=255) cGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCg > 1:20608412/1‑67 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCg > 1:52006440/1‑66 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGc < 1:54038582/68‑1 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGc < 1:37891496/68‑1 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGc < 1:33622857/68‑1 (MQ=255) aTTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCtt > 1:4974293/1‑68 (MQ=255) aTTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCt < 1:45572950/67‑1 (MQ=255) tcccgaGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAGGTGatgccgcatcccttttcg > 1:3469799‑M2/3‑50 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:20159965/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:49590806/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:27073101/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:26677265/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:15282163/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:39944438/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:43352378/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:19686671/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa > 1:42281286/1‑68 (MQ=255) cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAAt > 1:15046840/1‑67 (MQ=255) cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAAt > 1:38730571/1‑67 (MQ=255) cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAAt > 1:4859981/1‑67 (MQ=255) gTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCa < 1:29962688/67‑1 (MQ=255) ttAACGGCGCAACGCAAGTAAGCGAAAAGGGATGCGGCCTGTGATGCCGCATCCGGCTTAAATCCaaa < 1:56439581/68‑1 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaaa < 1:36230519/67‑1 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaaa < 1:48236054/67‑1 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaaa < 1:12413741/67‑1 (MQ=255) aaCGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACt < 1:46021700/68‑1 (MQ=255) cGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACtt > 1:7884485/1‑67 (MQ=255) ggCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTa > 1:50260497/1‑67 (MQ=255) tagcAACTGAAGTAAGCGAAAATGGATGCTGCATGTGATTCATCATCCGGCTTAAATCCAAACTTAcc < 1:23316181/66‑1 (MQ=255) gcgcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAc > 1:31999954/1‑67 (MQ=255) cgcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAcc < 1:11083842/67‑1 (MQ=255) gcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAccc < 1:46576934/67‑1 (MQ=255) gcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAccc < 1:19202824/67‑1 (MQ=255) gcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAccc < 1:42650156/67‑1 (MQ=255) gcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCt > 1:36835786/1‑68 (MQ=255) aaCGTAAGTAAGCGAAAAGGGATGCGGCATGTGatgccgcatcccttttcgcttacttccgttgcgcc > 1:23958404‑M2/1‑33 (MQ=255) aaCGGAAGTAAGCGAAATGGGATGCGGCATGTGatgccgcatcccttttcgcttacttccgttgcgc > 1:37172950‑M2/1‑33 (MQ=255) aaCGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgccgcatcccttttcgcttacttccgttgcgc > 1:7273132‑M2/1‑33 (MQ=255) aaCGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTc < 1:55921361/68‑1 (MQ=255) aaCGGAAGTAAGCGAAAAGGGATGCGGCATGGGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTc < 1:50461999/68‑1 (MQ=255) cGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCga < 1:16395663/68‑1 (MQ=255) ggAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaa > 1:41435497/1‑68 (MQ=255) ggAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaa > 1:10026326/1‑68 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaagaa < 1:51119351/68‑1 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaagaa < 1:54952222/68‑1 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaagaa < 1:6180419/68‑1 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaaga > 1:57941856/1‑67 (MQ=255) tAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAcc > 1:8508686/1‑68 (MQ=255) aaGCTAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAc < 1:468753/66‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAcc < 1:22853761/67‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAcc < 1:24859023/67‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAc < 1:32506665/66‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAc < 1:17213223/66‑1 (MQ=255) gCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGCACCAAt > 1:31213791/1‑68 (MQ=255) gCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAAt > 1:17721323/1‑68 (MQ=255) gCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAAt > 1:11329854/1‑68 (MQ=255) gAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATAc < 1:31553666/68‑1 (MQ=255) gAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATAc < 1:569570/68‑1 (MQ=255) aaaaGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATAc > 1:3289176/1‑67 (MQ=255) aaaGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATAccc < 1:52851876/68‑1 (MQ=255) aaaGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATAccc > 1:37494300/1‑68 (MQ=255) aGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATAccc > 1:47480223/1‑66 (MQ=255) aGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATAccc > 1:44812841/1‑66 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:10492106/1‑68 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTAGAAGAACCAATACCCGCt > 1:43896851/1‑68 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:9328710/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:52261966/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:41025447/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:53320959/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:29246283/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:2084682/66‑1 (MQ=255) aTGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTAtt > 1:12805372/1‑68 (MQ=255) aTGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTAt < 1:22541198/67‑1 (MQ=255) tGCGGCATGTGATGCCGCATCCGGCTTAAAACCAAACTTACCATTCGAAGAACCAATACCCGCTATTg > 1:12079515/1‑68 (MQ=255) gCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGa < 1:28378129/68‑1 (MQ=255) gCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGa < 1:1823819/68‑1 (MQ=255) gCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGa < 1:2785830/68‑1 (MQ=255) cGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGa > 1:30951164/1‑67 (MQ=255) cGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGa > 1:41910740/1‑67 (MQ=255) ggCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGAcc > 1:33303488/1‑68 (MQ=255) aTGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAgc < 1:42926789/68‑1 (MQ=255) tgtgATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAgc > 1:21310005/1‑67 (MQ=255) gATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGcgcc > 1:14649694/1‑67 (MQ=255) | GCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCG > CP009273/1182481‑1182615 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |