| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1182545 | NA (NA) | 10 (0.020) | 4/90 | NT | NA | noncoding (7/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 1182548 | NA (NA) | noncoding (10/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 731 total aligned reads displayed.
GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCG > CP009273/1182478‑1182612 | gCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAtgt < 1:27002252/67‑1 (MQ=255) gCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAtgt < 1:48004722/67‑1 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:45606221‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:55399996‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:35406534‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:27995700‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:1684730‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:48449530‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:31637990‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatg > 1:3080255‑M2/1‑63 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGat > 1:21314036‑M2/1‑63 (MQ=255) aTCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgccgc < 1:35873729‑M2/68‑8 (MQ=255) tCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgccgc > 1:33493374‑M2/1‑60 (MQ=255) gTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgccgcat < 1:5032431‑M2/67‑10 (MQ=255) gTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgccgcat < 1:55140958‑M2/67‑10 (MQ=255) ccGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgccgcatccc > 1:47470099‑M2/1‑56 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCg > 1:48888878/1‑66 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGc < 1:46884592/68‑1 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGc < 1:236976/68‑1 (MQ=255) aTTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCtt > 1:26596861/1‑68 (MQ=255) aTTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCtt > 1:42323929/1‑68 (MQ=255) tcccgaGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAGGTGatgccgcatcccttttcg > 1:3469799‑M2/3‑50 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa > 1:55883046/1‑68 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:39944438/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:19686671/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:15219640/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:6759175/68‑1 (MQ=255) cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCTCATCCGGCTGAAAt > 1:18215270/1‑67 (MQ=255) cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAAt < 1:43174780/67‑1 (MQ=255) cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAAt > 1:38730571/1‑67 (MQ=255) cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAAt > 1:4538076/1‑67 (MQ=255) cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAAt > 1:13553284/1‑67 (MQ=255) cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAAt > 1:42772981/1‑67 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaaa < 1:1481696/67‑1 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaa > 1:5058016/1‑66 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaa > 1:41500894/1‑66 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCCGCTTAAATCCaa > 1:11146810/1‑66 (MQ=255) aaCGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACt < 1:56540771/68‑1 (MQ=255) cGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATcacatgccgcatcccttttcgcttacttccgt > 1:12319126‑M1/1‑36 (MQ=255) ggCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTa > 1:53251582/1‑67 (MQ=255) tagcAACTGAAGTAAGCGAAAATGGATGCTGCATGTGATTCATCATCCGGCTTAAATCCAAACTTAcc < 1:23316181/66‑1 (MQ=255) gcgcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAc > 1:7898098/1‑67 (MQ=255) gcgcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAc > 1:57172931/1‑67 (MQ=255) ctcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAcc < 1:31313353/65‑1 (MQ=255) gcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCt > 1:33262019/1‑68 (MQ=255) aaCGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTc < 1:43738925/68‑1 (MQ=255) aCGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCg < 1:4609624/68‑1 (MQ=255) cGGAAGTATGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCga < 1:49907445/68‑1 (MQ=255) ggAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaa > 1:10026326/1‑68 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaaga > 1:51525592/1‑67 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaaga > 1:22539200/1‑67 (MQ=255) tAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAcc > 1:8508686/1‑68 (MQ=255) tAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAcc > 1:45147918/1‑68 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGTCTTAAATCCAAACTTACCCTTCGAAGAAc < 1:20221294/66‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAcc < 1:29124550/67‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAcc < 1:17416438/67‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAc < 1:30238369/66‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAc < 1:19180060/66‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAc < 1:25335901/66‑1 (MQ=255) gCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAAt > 1:22793927/1‑68 (MQ=255) gCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAAt > 1:46616426/1‑68 (MQ=255) gCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAAt > 1:30065288/1‑68 (MQ=255) aaaaGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATAc > 1:3289176/1‑67 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:44233093/1‑68 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:58099940/1‑68 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:10567857/1‑68 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:44568105/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:9328710/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:13920514/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:57711346/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:16317276/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:20991521/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:52193322/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:2738576/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:49480893/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:28664433/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:3102253/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:42026081/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:37861815/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:32339155/66‑1 (MQ=255) aTGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTAt < 1:37124191/67‑1 (MQ=255) aTGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTAt < 1:18662897/67‑1 (MQ=255) gCGGCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgat < 1:49663405‑M1/68‑62 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:25847470‑M1/68‑64 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:25078939‑M1/68‑64 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:24343467‑M1/68‑64 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:2969330‑M1/68‑64 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:22327224‑M1/68‑64 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:41172992‑M1/68‑64 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:21848946‑M1/68‑64 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:40371849‑M1/68‑64 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:20633182‑M1/68‑64 (MQ=255) ggCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGCAGCATTACCCGCTATTGa > 1:36708939/1‑66 (MQ=255) ggCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATCCCCGCTATTGAcc > 1:12980318/1‑68 (MQ=255) gCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggccgatca > 1:11524926‑M1/1‑4 (MQ=255) gCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGCCCa > 1:52743029/1‑68 (MQ=255) gCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCa > 1:53917942/1‑68 (MQ=255) cATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca > 1:745466‑M1/1‑3 (MQ=255) aTGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAgc > 1:37484380/1‑68 (MQ=255) tgtgATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAgcg < 1:12636465/68‑1 (MQ=255) | GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCG > CP009273/1182478‑1182612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |