BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1314763 =	474 (0.680)	41 (0.070)	12/94	NT	10.0%	coding (879/1596 nt)	trpD	fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase
*	?	CP009273	1314808 =	339 (0.580)	41 (0.070)	12/94	NT	10.0%	coding (834/1596 nt)	trpD	fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase

Only 100 of 131 total aligned reads displayed.

CCGGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1314837‑1314763

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccagtACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGCGGTT  >  CP009273/1314808‑1314874

CCGGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTA                                                                             >  1:44194004/1‑67

 CGGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACC                                                                           <  1:48800401/68‑1

  GGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAGCAGTATCAATATTTCTACCG                                                                          <  1:13170782/68‑1

  GGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCG                                                                          <  1:41017523/68‑1

  GGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCG                                                                          <  1:46710678/68‑1

  GGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCG                                                                          <  1:45166432/68‑1

  GGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCG                                                                          <  1:44591625/68‑1

  GGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCG                                                                          <  1:24582058/68‑1

  GGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCG                                                                          <  1:54846544/68‑1

  GGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCG                                                                          <  1:43160973/68‑1

  GGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCG                                                                          <  1:369384/68‑1

  GGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCG                                                                          <  1:7048569/68‑1

  GGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCG                                                                          <  1:29127975/68‑1

  GGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCG                                                                          <  1:11267665/68‑1

  GGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCG                                                                          <  1:34667190/68‑1

  GGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTAACAATATTTCTACCG                                                                          <  1:36707968/68‑1

  GGATTATCTGTTTGCTGATATCGTCGCTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCG                                                                          <  1:40063321/68‑1

    ATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCC                                                                        >  1:9575012/1‑68

    ATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCC                                                                        >  1:2396872/1‑68

    ATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCC                                                                        >  1:20376268/1‑68

    ATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCC                                                                        >  1:50314231/1‑68

    ATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGC                                                                         <  1:41352264/67‑1

    ATTATCTGTTTGCTGATATCGGCGGTACTTGCTGTGACGGCAGGAACAGTATCAATATTTCTACCGC                                                                         <  1:23574341/67‑1

     TTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCA                                                                       <  1:18010815/68‑1

     TTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCA                                                                       <  1:51181255/68‑1

     TTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCC                                                                        <  1:36056018/67‑1

     TTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCC                                                                        <  1:45666130/67‑1

     TTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCC                                                                        <  1:43935010/67‑1

      TATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAG                                                                      <  1:48673886/68‑1

      TATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAG                                                                      >  1:936530/1‑68

      TATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAG                                                                      <  1:25887059/68‑1

      TATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAG                                                                      >  1:43479482/1‑68

       ATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGT                                                                     <  1:48775298/68‑1

       ATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGT                                                                     <  1:9025820/68‑1

       ATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGT                                                                     <  1:1707603/68‑1

       ATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGT                                                                     <  1:50498948/68‑1

       ATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGT                                                                     <  1:21919702/68‑1

        TCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGT                                                                     >  1:21094552/1‑67

        TCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGAAACAGTATCAATATTTCTACCGCCAGT                                                                     >  1:42561036/1‑67

             aTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCCGTACCGA                                                                <  1:15911633/66‑1

             TTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTCCCGCCAGTACCGA                                                                <  1:56551707/67‑1

             TTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGA                                                                <  1:55220612/67‑1

             TTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGA                                                                <  1:16838305/67‑1

             TTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGA                                                                <  1:16034007/67‑1

             TTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGA                                                                <  1:34379635/67‑1

              TGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACG                                                              <  1:34502259/68‑1

               GCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGA                                                             <  1:15409542/68‑1

                 TGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGAT                                                            <  1:10314353/67‑1

                     ATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAG                                                       <  1:21800151/68‑1

                      TCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGC                                                      <  1:33510004/68‑1

                       CGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCA                                                     <  1:42018306/68‑1

                       CGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCA                                                     <  1:24704819/68‑1

                       CGTCGGTACTCGCGGTGACGGCAGCAACAGTATCAATATTTCAACCGCCAGAACCGACGATATCAGCA                                                     <  1:19854129/68‑1

                          CGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAA                                                   <  1:10652669/67‑1

                           cgcACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:27032628/65‑1

                           GGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:25553778/68‑1

                           GGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:26241129/68‑1

                           GGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:42029945/68‑1

                           GGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:2452623/68‑1

                           GGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:22043752/68‑1

                           GGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:39922317/68‑1

                           GGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:37670648/68‑1

                           GGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:37314169/68‑1

                           GGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:4957845/68‑1

                           GGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:49856664/68‑1

                           GGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:19640168/68‑1

                           GGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:31779029/68‑1

                           GGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:53292981/68‑1

                           GGTACTGGCGGGGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:32372706/68‑1

                           GGTACTGGCGGGGACGGCAGCAACAGTATCAATATTTCAACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:53917130/68‑1

                           GGTACTGGCGGGGACCGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACA                                                 <  1:41780010/68‑1

                           GGTACGGGCGGTGACGGCAGCAACAGTATCAAAATATCTACCCCCAGTACCGACGATATCAGCAAACA                                                 <  1:12705420/68‑1

                             aACTGGCGGGGACGGCTGCATCAGTATCAATATTACTACCGCCAGTACCGACGATATCAGCAAACAG                                                <  1:30218599/66‑1

                              ACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACAGA                                               <  1:28269018/67‑1

                              ACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACAGA                                               <  1:51163877/67‑1

                              ACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGTACCGACGATATCAGCAAACAGA                                               <  1:26610816/67‑1

                                          GGCAGCAACAGTATCAATATTCCACCCGCCCGTACCGACGATATCAGCAAACAGATAATCCGGGCGCG                                  <  1:21079162/68‑1

                                                                   CCGCCAGTACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAG         <  1:22867209/68‑1

                                                                   CCGCCAGTACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTA          >  1:24914468/1‑67

                                                                   CCGCCAGTACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTA          >  1:16566675/1‑67

                                                                   CCGCCAGTACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTA          >  1:46454810/1‑67

                                                                     GCCAGTACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCG       <  1:29854326/68‑1

                                                                      CCAGTACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGC      >  1:6821701/1‑68

                                                                      CCAGTACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGC      >  1:15915534/1‑68

                                                                      CCAGTACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGC      >  1:16378008/1‑68

                                                                      CCAGTACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGC      >  1:37566046/1‑68

                                                                      CCAGTACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGC      >  1:17555979/1‑68

                                                                      CCAGTACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGC      >  1:53428980/1‑68

                                                                      CCAGTACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCGGCGTTTTCCAGTAGCGC      >  1:2764604/1‑68

                                                                      CCAGTACAGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGC      >  1:51792552/1‑68

                                                                          TACCGACGATATCAGCAAACAGATAATGCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGCGGTT  >  1:53632418/1‑68

                                                                          TACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGCGGTT  >  1:10426340/1‑68

                                                                          TACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGCGGTT  >  1:19112127/1‑68

                                                                          TACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGCGGTT  >  1:20956371/1‑68

                                                                          TACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGCGGTT  >  1:22657699/1‑68

                                                                          TACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGCGGTT  >  1:4298603/1‑68

                                                                          TACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGCGGTT  >  1:29824473/1‑68

                                                                          TACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGCGGTT  >  1:36474434/1‑68

                                                                          TACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGCGGTT  >  1:33370892/1‑68

                                                                          TACCGACGATATCAGCAAACAGATAATCCCGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGCGGTT  >  1:4049040/1‑68

CCGGATTATCTGTTTGCTGATATCGTCGGTACTGGCGGTGACGGCAGCAACAGTATCAATATTTCTACCGCCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1314837‑1314763

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccagtACCGACGATATCAGCAAACAGATAATCCGGGCGCGGGAACGGCGCTGCGTTTTCCAGTAGCGCGGTT  >  CP009273/1314808‑1314874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.