| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2230043 = | NA (NA) | 7 (0.010) | 6/98 | NT | NA | noncoding (31/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 3505959 | NA (NA) | noncoding (90/90 nt) | REP250 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP250 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 212 total aligned reads displayed.
TGCAACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2230108‑2230043‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGATAA < CP009273/3505959‑3505886 TGCAACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGC < 1:8019770/68‑1TGCAACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGG < 1:9001365/67‑1TGCAACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGG < 1:54282398/67‑1TGCAACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGG < 1:36763977/67‑1TGCAACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGG > 1:27833988/1‑67 GCAACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCC > 1:1094796/1‑68 GCAACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCC > 1:12096326/1‑68 AACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCGACATACTGATTTGTATGGTTTTGTAGGCCG < 1:28466507/67‑1 AACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGG < 1:50903485/68‑1 AACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGG < 1:29247282/68‑1 AACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGG < 1:42654900/68‑1 AACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGG < 1:1950420/68‑1 AACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGG < 1:18668137/68‑1 AACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGG < 1:18417928/68‑1 AACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGG < 1:17994468/68‑1 AACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGG < 1:40603622/68‑1 AACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGG < 1:1677353/68‑1 AACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGG < 1:48890658/68‑1 AACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCG < 1:53295819/67‑1 AACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCG < 1:55680465/67‑1 AACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCG < 1:20315516/67‑1 AACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCG < 1:20839027/67‑1 AACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCG < 1:23691990/67‑1 ACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGA < 1:33954441/68‑1 ACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGA < 1:30924414/68‑1 ACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGA < 1:45437/68‑1 ACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGA < 1:14420456/68‑1 ACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGA < 1:35494322/68‑1 ACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGA < 1:36590483/68‑1 ACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGA < 1:38572390/68‑1 ACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGA < 1:5552285/68‑1 ACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGA < 1:22539028/68‑1 ACGCAGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGA < 1:27529464/68‑1 CGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGAT > 1:51992876/1‑68 CGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGAT > 1:56608661/1‑68 CGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGAT > 1:20657013/1‑68 TATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATGCGGCTTGAACGC < 1:54433243/68‑1 AGCTCAACATACAGATTTGTATGGTTTTGTAGGCCGGGTGCGGCTTGAACGCCTTATCCGGCCGACAt > 1:41148398/1‑67 GCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAA > 1:37626847/1‑68 TTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAAT < 1:39412509/68‑1 GCCGTATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCC < 1:41871141/68‑1 GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCC < 1:28871265/68‑1 GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCC < 1:29124971/68‑1 GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCC < 1:24360717/68‑1 GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCC < 1:3878312/68‑1 GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCC < 1:51115167/68‑1 GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCC < 1:52060103/68‑1 GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCC < 1:1701817/68‑1 GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCC < 1:15431220/68‑1 GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAA < 1:7741534/37‑1 GCCGGATGCGGCGTGAACGCCCTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCC < 1:53568567/68‑1 CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGG > 1:10771335/1‑65 CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGG > 1:43974038/1‑65 CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGG > 1:46514885/1‑65 CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGG > 1:4720764/1‑65 CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGG > 1:2647996/1‑65 CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGG > 1:26268268/1‑65 CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGG > 1:34554785/1‑65 CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGG > 1:18983915/1‑65 CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGG > 1:23283125/1‑65 CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGG > 1:31469819/1‑65 CCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCC < 1:14915536/67‑1 CGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTG < 1:31918877/68‑1 CGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTG > 1:46818347/1‑68 CGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCT < 1:48284800/67‑1 GGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:56940297/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCGTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:38153152/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:27070468/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:27222402/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:52360753/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:24102180/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:11613640/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:54993488/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:19695200/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:17642251/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:57838371/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:16279474/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:11225625/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:815897/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:49446863/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:36237023/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:47819199/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:13684159/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:46392867/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:44890863/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:44436058/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:43110821/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:33045682/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:41455161/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:39689215/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGA < 1:35910207/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATAATGCAAGGAAATGTAGGCCTGA < 1:25653906/68‑1 GATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGAT > 1:29761726/1‑68 GATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGAT > 1:40898299/1‑68 TGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCATGGAAATGTAGGCCTGATAA > 1:26713287/1‑68 TGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGATAA < 1:6606794/68‑1 TGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGATAA > 1:57565330/1‑68 TGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGATAA > 1:3517589/1‑68 TGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGATAA > 1:48849500/1‑68 TGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGATA < 1:37501885/67‑1 TGCAACGCTGGCGCGTTTTATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2230108‑2230043‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGATAA < CP009273/3505959‑3505886 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |