| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2230043 = | NA (NA) | 7 (0.010) | 6/98 | NT | NA | noncoding (31/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 3505959 | NA (NA) | noncoding (90/90 nt) | REP250 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP250 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 983 total aligned reads displayed.
TAAAACCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATC > CP009273/2229977‑2230110 | gcgttcacgccgcatccggcaacaggagccaaatgccggatgcaacgctggcgcgttTTATCCGGCCt < 1:6886311‑M1/11‑1 (MQ=255)gcgttcaagccgcatccggcaacaggagccaaatgccggatgcaacgctggcgcgttTTATCCGGCCt < 1:14663086‑M1/11‑1 (MQ=255) cgttcacgccgcatccggcaacaggagccaaatgccggatgcaacgctggcgcgttTTATCCGGCCt < 1:17530065‑M1/11‑1 (MQ=255) cgttcacgccgcatccggcaacaggagccaaatgccggatgcaacgctggcgcgttTTATCCGGCCt > 1:11214337‑M1/57‑67 (MQ=255) cgttcacgccgcatccggcaacaggagccaaatgccggatgcaacgctggcgcgttTTATCCGGCCt < 1:38008381‑M1/11‑1 (MQ=255) aaaaCCAGAGACGCATCCGGCATTTGTTTCCTGTCGCCGGATGCGGCTTGACCGCCTTATCCGGCCt < 1:22443937/67‑1 (MQ=21) aaaaCCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCt < 1:24104276/67‑1 (MQ=255) aaaaCCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCt < 1:15436396/67‑1 (MQ=255) aaaaCCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCt < 1:49575177/67‑1 (MQ=255) aaaaCCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCt < 1:13865566/67‑1 (MQ=255) gttcacgccgcatccggcaacaggagccaaatgccggatgcaacgctggcgcgttTTATCCGGCCTa > 1:40775597‑M1/56‑67 (MQ=255) gttcacgccgcatccggcaacaggagccaaatgccggatgcaacgctggcgcgttTTATCCGGCCTAc > 1:27089143‑M1/56‑68 (MQ=255) gttcacgccgcatccggcaacaggagccaaatgccggatgcaacgctggcgcgttTTATCCGGCCTAc > 1:47673311‑M1/56‑68 (MQ=255) aaaCCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTAc < 1:21904824/68‑1 (MQ=255) tcacgccgcatccggcaacaggagccaaatgccggatgcaacgctggcgcgttTTATCCGGCCTACaa > 1:165615‑M1/54‑68 (MQ=255) tcacgccgcatccggcaacaggagccaaatgccggatgcaacgctggcgcgttTTATCCGGCCTACa > 1:39809732‑M1/54‑67 (MQ=255) aCCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACaa > 1:51728427/1‑68 (MQ=255) aCCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACaa > 1:5379633/1‑68 (MQ=255) ccAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACaaa < 1:6319783/68‑1 (MQ=255) ccAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACaaa < 1:10919956/68‑1 (MQ=255) cAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACaaa > 1:35233792/1‑67 (MQ=255) gaCGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAAcc < 1:22855536/66‑1 (MQ=255) gaCGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAAc < 1:37448118/65‑1 (MQ=255) ccGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCAt > 1:28667686/2‑67 (MQ=255) aCGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCAt > 1:6036778/1‑67 (MQ=255) aCGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCAt > 1:18856909/1‑67 (MQ=255) aCGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCAt > 1:17045600/1‑67 (MQ=255) aCGCATCCGGCATTTGGTTCATGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCAt > 1:34005693/1‑67 (MQ=255) cGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCAt < 1:55314939/66‑1 (MQ=255) cGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCAt < 1:50219064/66‑1 (MQ=255) cGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCAt < 1:35863478/66‑1 (MQ=255) cGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCAt < 1:20612224/66‑1 (MQ=255) cGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCAt < 1:28001784/66‑1 (MQ=255) cGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCAt < 1:52137536/66‑1 (MQ=255) cGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCAt < 1:53116670/66‑1 (MQ=255) cGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCAt < 1:3028773/66‑1 (MQ=255) cGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATAc > 1:11970837/1‑68 (MQ=255) aTCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACaaa < 1:54586405/68‑1 (MQ=255) ccGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATc < 1:30725732/68‑1 (MQ=255) ccGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATc < 1:32440870/68‑1 (MQ=255) ccGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATc < 1:56176404/68‑1 (MQ=255) ccGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATc < 1:905059/68‑1 (MQ=255) cGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCa < 1:15867245/68‑1 (MQ=255) ggCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAg < 1:34577246/68‑1 (MQ=255) ggCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAg > 1:44058142/1‑68 (MQ=255) ggCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAg < 1:29791615/68‑1 (MQ=255) ggCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAg < 1:54299537/68‑1 (MQ=255) ggCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAg < 1:19698447/68‑1 (MQ=255) cATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTa > 1:26446547/1‑68 (MQ=255) aTTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTa < 1:56581381/67‑1 (MQ=255) aTTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTAt > 1:31976757/1‑68 (MQ=255) aTTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTAt < 1:20294037/68‑1 (MQ=255) aTTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTAt < 1:18355535/68‑1 (MQ=255) ttGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGt < 1:33157943/68‑1 (MQ=255) ttGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGt < 1:52680820/68‑1 (MQ=255) ttGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGt < 1:45309952/68‑1 (MQ=255) ttGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGt < 1:46262462/68‑1 (MQ=255) tCCTTTGGCCGGATGCGGCTTGAACGCCTTATACGGCCTTCAAAACCATACAAATCAGTATGTTGAGc < 1:25157287/68‑1 (MQ=18) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCTGCCTACAAAACCATACAAATCAGTATGTTGAGc < 1:31081116/68‑1 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 1:853487/68‑1 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 1:45694652/68‑1 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 1:7660561/68‑1 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 1:9540256/68‑1 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 1:42717843/68‑1 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 1:1045922/68‑1 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 1:1172972/68‑1 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 1:41106207/68‑1 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 1:12659809/68‑1 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 1:14235655/68‑1 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 1:2145408/68‑1 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 1:23698552/68‑1 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 1:24464478/68‑1 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 1:29347358/68‑1 (MQ=255) ccTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCt > 1:32875083/1‑68 (MQ=255) gTCTCCGGATGCGGATTTAACGCCTTATACGGCCTAAAAAAACATACAAATCAGTATGTTGAGCTTAt < 1:10032184/68‑1 (MQ=255) gTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTAt < 1:44568314/68‑1 (MQ=255) gTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTAt < 1:46827388/68‑1 (MQ=255) gTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTAt < 1:25753908/68‑1 (MQ=255) gTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTAt > 1:39081810/1‑68 (MQ=255) cGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTAtt < 1:51300140/67‑1 (MQ=255) agCCGGATGCGGCTTGAACGCCTTATCCGGCCTTCAAAACCATCCATATCAGTATGTTGAGCTTAtt < 1:55816492/66‑1 (MQ=21) aTGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGc < 1:40589226/67‑1 (MQ=255) aTGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGc < 1:27495746/67‑1 (MQ=255) aTGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGc < 1:47437762/67‑1 (MQ=255) gCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCgg > 1:36603733/1‑68 (MQ=255) ggCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGa < 1:19345773/67‑1 (MQ=255) aCGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAAcgc < 1:41881363/68‑1 (MQ=255) aCGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAAcgc > 1:20862307/1‑68 (MQ=255) cGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTCGGCCGGATAAAAcgc > 1:43378183/1‑67 (MQ=255) cGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAAcgcg < 1:4847460/68‑1 (MQ=255) cGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAAcgcg < 1:31545130/68‑1 (MQ=255) cGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAAcgc > 1:57217943/1‑67 (MQ=255) cGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAAcgc > 1:49115995/1‑67 (MQ=255) gCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAAcgcg > 1:56878190/1‑67 (MQ=255) TATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGc > 1:57710884‑M1/1‑68 (MQ=255) tccggcCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGt < 1:38572390‑M1/62‑1 (MQ=255) ccggcCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGGCGGATAAAACGCGCCAGCGtt < 1:53583298‑M1/63‑1 (MQ=255) ccggcCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGtt < 1:50903485‑M1/63‑1 (MQ=255) cggcCTACAAAACCAGACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGtt < 1:13230945‑M1/63‑1 (MQ=255) cCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCa < 1:29082470‑M1/66‑1 (MQ=255) | TAAAACCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATC > CP009273/2229977‑2230110 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |