| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2230043 = | NA (NA) | 7 (0.010) | 6/98 | NT | NA | noncoding (31/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 3505959 | NA (NA) | noncoding (90/90 nt) | REP250 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP250 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 1013 total aligned reads displayed.
GGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTAC > CP009273/3505892‑3506026 | ggCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCTGGATAAGGCGTTCACGCCGCATCCGGC < 1:39558667‑M2/68‑1 (MQ=255) ccTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAt > 1:19433141/1‑68 (MQ=255) ccTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAt > 1:58069806/1‑68 (MQ=255) ccTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAt > 1:38052949/1‑68 (MQ=255) aTTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACa > 1:18973991/1‑68 (MQ=255) aTTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACa > 1:52586611/1‑68 (MQ=255) aTTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACa > 1:30816626/1‑68 (MQ=255) aTTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACa > 1:10149918/1‑68 (MQ=255) aTTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACa > 1:16938596/1‑68 (MQ=255) tttCCTTGCAATATGTGCATTACTTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGCctacaaag < 1:42789643‑M2/68‑9 (MQ=255) tCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACaaa > 1:53730497/1‑67 (MQ=255) tCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAg < 1:2501655/68‑1 (MQ=255) cTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAgcg < 1:48643052/68‑1 (MQ=255) cTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAgc > 1:48075513/1‑67 (MQ=255) cTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAgc > 1:2731582/1‑67 (MQ=255) aaTATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAAtt > 1:31244047/1‑68 (MQ=255) aaTATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAAtt > 1:24399030/1‑68 (MQ=255) aaTATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAAtt > 1:18033194/1‑68 (MQ=255) aaTATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAAtt > 1:49583842/1‑68 (MQ=255) aaTATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAAtt > 1:820531/1‑68 (MQ=255) tatGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAAttt > 1:938247/1‑67 (MQ=255) gtgCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCa > 1:36089938/1‑68 (MQ=255) tgCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCa > 1:23011327/1‑67 (MQ=255) tgCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCa > 1:56601331/1‑67 (MQ=255) gCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGc < 1:12287501/68‑1 (MQ=255) cATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCa > 1:22546170/1‑68 (MQ=255) cATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCa > 1:3463635/1‑68 (MQ=255) cATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCa > 1:56120554/1‑68 (MQ=255) aTTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCa < 1:4899392/67‑1 (MQ=255) ttACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAt < 1:3032506/68‑1 (MQ=255) aCTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAg > 1:54547945/1‑68 (MQ=255) aCTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAg > 1:13353604/1‑68 (MQ=255) aCTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAg > 1:55566667/1‑68 (MQ=255) aCTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAg > 1:20112974/1‑68 (MQ=255) aCTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAg > 1:14584728/1‑68 (MQ=255) aCTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAg > 1:40093059/1‑68 (MQ=255) aCTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAg > 1:2460659/1‑68 (MQ=255) aCTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAg > 1:25853201/1‑68 (MQ=255) tttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTg > 1:29749650/1‑68 (MQ=255) tttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTg > 1:50921820/1‑68 (MQ=255) tttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTg > 1:52181633/1‑68 (MQ=255) tttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTg > 1:2086880/1‑68 (MQ=255) tttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC < 1:7741534‑M2/37‑1 (MQ=255) tGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGaa < 1:24033696/68‑1 (MQ=255) gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAt > 1:25344467/1‑68 (MQ=255) gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAt > 1:11292244/1‑68 (MQ=255) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACACAGCGCAATTTGCCAGCAATAGTGAAtt > 1:29076994/1‑67 (MQ=255) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAtt > 1:31643604/1‑67 (MQ=255) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAtt > 1:44144632/1‑67 (MQ=255) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAtt > 1:1281746/1‑67 (MQ=255) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAtt > 1:34295707/1‑67 (MQ=255) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAtt > 1:19840410/1‑67 (MQ=255) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAtt > 1:57435189/1‑67 (MQ=255) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAtt > 1:27724313/1‑67 (MQ=255) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAtt > 1:20546450/1‑67 (MQ=255) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAtt > 1:26215477/1‑67 (MQ=255) aGGCCAGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAtt > 1:33613922/1‑67 (MQ=255) ggCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCATTAGTGAAttcc > 1:42491572/1‑66 (MQ=255) ggCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTAc > 1:53172589/1‑68 (MQ=255) ggCCGGATAAGGCGTACACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTAc > 1:1646013/1‑68 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACg > 1:4101363/1‑68 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACg > 1:50177380/1‑68 (MQ=255) ccGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACg > 1:41983940/1‑67 (MQ=255) aGGGGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGcc < 1:10900589/68‑1 (MQ=255) aGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGcc < 1:37003168/68‑1 (MQ=255) ggCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGcc > 1:35226861/1‑67 (MQ=255) ggTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcaca > 1:21395448/2‑68 (MQ=255) ccttCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcaca > 1:18421422/3‑68 (MQ=255) cGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcaca > 1:717246/1‑68 (MQ=255) cGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcaca > 1:44733990/1‑68 (MQ=255) cGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcaca > 1:54207476/1‑68 (MQ=255) cGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcaca > 1:39180659/1‑68 (MQ=255) cGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcaca > 1:5167771/1‑68 (MQ=255) cGTTCACGCCGCATCCCGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcaca > 1:26721036/1‑68 (MQ=255) aCGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGt > 1:47176045/1‑44 (MQ=255) aCGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAAcc > 1:4629639/1‑68 (MQ=255) aCGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAAcc > 1:14243590/1‑68 (MQ=255) cgccgcATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCa > 1:23213466/1‑68 (MQ=255) ccgcATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCaa > 1:41387316/1‑67 (MQ=255) ccgcATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCaa > 1:15779115/1‑67 (MQ=255) ccgcATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCaa > 1:46789072/1‑67 (MQ=255) aTCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGc < 1:15243190/67‑1 (MQ=255) tCCGGCctacaaaaccatacaaatcagtatgttgagcttattgtaggccggataaaacgcgccagcgt < 1:36590483‑M2/68‑63 (MQ=255) tCCGGCctacaaaaccatacaaatcagtatgttgagcttattgtaggccggataaaacgcgccagcgt < 1:45437‑M2/68‑63 (MQ=255) tCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCtt < 1:50530043/68‑1 (MQ=255) tCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCtt < 1:17478215/68‑1 (MQ=255) tCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCt > 1:21862121/1‑67 (MQ=255) ccGGCctacaaaaccatacaaatcagtatgttgagcttattgtaggccggataaaacgcgccagcgtt < 1:56831974‑M2/68‑64 (MQ=255) ccGGCctacaaaaccatacaaatcagtatgttgagcttattgtaggccggataaaacgcgccagcgtt < 1:6151203‑M2/68‑64 (MQ=255) ccGGCctacaaaaccatacaaatcagtatgttgagcttattgtaggccggataaaacgcgccagcgtt < 1:40603622‑M2/68‑64 (MQ=255) ccGGCctacaaaaccatacaaatcagtatgttgagcttattgtaggccggataaaacgcgccagcgtt < 1:37584901‑M2/68‑64 (MQ=255) cGGCctacaaaaccatacaaatcagtatgttgagcttattgtaggccggataaaacgcgccagcgtt < 1:38791461‑M2/67‑64 (MQ=255) cGGCctacaaaaccatacaaatcagtatgtcgagcttattgtaggccggataaaacgcgccagcgtt < 1:28466507‑M2/67‑64 (MQ=255) ggCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGt < 1:32607106/68‑1 (MQ=255) ggCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGt < 1:38433584/68‑1 (MQ=255) gCctacaaaaccatacaaatcagtatgttgagcttaatgtaggccggataaaacgcgccagcgttgca < 1:33143368‑M2/68‑67 (MQ=255) gCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGt > 1:5509747/1‑67 (MQ=255) gCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGt > 1:8694137/1‑67 (MQ=255) cATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTTGCCACAAAACCAATCGCTTCGTac > 1:32031595/1‑68 (MQ=255) cATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTac > 1:4352569/1‑68 (MQ=255) | GGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTAC > CP009273/3505892‑3506026 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |