New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2540715357 (0.510)30 (0.050) 7/94 NT 7.1% coding (684/1425 nt) murP N‑acetylmuramic acid permease, EIIBC component, PTS system
?CP009273 = 2540730 484 (0.820)coding (699/1425 nt) murP N‑acetylmuramic acid permease, EIIBC component, PTS system

Only 100 of 469 total aligned reads displayed.

TAACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2540640‑2540715
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcaatCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  CP009273/2540730‑2540664
                                                                                                                                               
 AACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGC                                                                             >  1:47217746/1‑67
 AACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGC                                                                             >  1:16073863/1‑67
  ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:10543199/1‑68
  ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:24883464/1‑68
  ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:39250698/1‑68
  ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:4893359/1‑68
  ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:6915733/1‑68
   CCCCGCAGCGACCCCCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:52173876/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCTGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCTCG                                                                          >  1:38639719/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGTTTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:46784596/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGCTCCGCGCG                                                                          >  1:6009374/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:8956537/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:41709050/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:41338124/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:40245983/68‑1
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:10102715/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:38287689/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:37731425/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:44151654/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:37385820/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:35352852/68‑1
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:34853462/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:33520128/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:31912312/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:31169053/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:42988581/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:43197582/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:45520017/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:8289474/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:48449396/68‑1
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:7549050/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:49378322/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:49811467/68‑1
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:50979321/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:5373920/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:55844303/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:56408832/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:57347156/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:57872317/68‑1
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:15621136/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:18890581/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:19239138/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:18510145/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:20766691/68‑1
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:21178105/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:17821903/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:17279146/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:22269202/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:22721885/68‑1
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:16696209/68‑1
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:15005384/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:13097941/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:11111662/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:29182553/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:12110260/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:14531530/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:27374256/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:13965717/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:26176088/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATACGCGCG                                                                          >  1:47553270/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCAGCGATCCGCGCG                                                                          >  1:13321175/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCACATCGATCCGCGCG                                                                          >  1:24127072/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCACATCGATCCGCGCG                                                                          >  1:36687107/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCATTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:21626113/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:12745295/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:4508551/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:8576318/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:46382769/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:51741446/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:44442630/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:35962165/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:43859865/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:25182550/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:24466601/68‑1
       GCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAA                                                                      <  1:30610236/68‑1
       GCAGCGACCACCGGTTACTACGCCGGATTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAA                                                                      <  1:11564511/68‑1
         AGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAAT                                                                     <  1:406597/67‑1
             ACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCACGCGGCAATCAGC                                                                 >  1:54243870/1‑67
                                                   TCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGTTGGGCAGCCCA                          >  1:40861496/1‑68
                                                   TCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGTTGGGCAGACCA                          >  1:2329144/1‑68
                                                               TCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGA              >  1:15406395/1‑68
                                                                    GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:50394336/1‑68
                                                                    GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:45864693/1‑68
                                                                    GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:1470682/1‑68
                                                                    GCGGCAATCAGCACGCCGATAATATTGCCCCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:18056617/1‑68
                                                                     CGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCG        >  1:32979875/1‑68
                                                                     CGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCG        >  1:36511255/1‑68
                                                                      cGCAATCAGCACGCCGATAATATTGCCGCGCGGCTCGATGGGCAGCCCAAAGAAATCGTGAAAACCG        >  1:54714549/2‑67
                                                                        CAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGC      <  1:20179842/67‑1
                                                                        CAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGC      <  1:29640361/67‑1
                                                                         AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    <  1:5494902/68‑1
                                                                         AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    <  1:42436890/68‑1
                                                                         AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    >  1:53300251/1‑68
                                                                         AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    <  1:32320637/68‑1
                                                                         AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    <  1:2777991/68‑1
                                                                          ATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTA   >  1:56830791/1‑68
                                                                           TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  1:2706248/68‑1
                                                                           TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  1:34139213/68‑1
                                                                           TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  1:16373865/68‑1
                                                                           TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  1:31587966/68‑1
                                                                                                                                               
TAACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2540640‑2540715
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcaatCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  CP009273/2540730‑2540664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.