| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2540715 | 357 (0.510) | 30 (0.050) | 7/94 | NT | 7.1% | coding (684/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system |
| ? | CP009273 | = 2540730 | 484 (0.820) | coding (699/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system | |||||
Only 100 of 674 total aligned reads displayed.
ACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGATCTCGACA > CP009273/2540663‑2540797 | cTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGa < 1:31587966‑M2/68‑2 (MQ=255) cTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGa < 1:24405607‑M2/68‑2 (MQ=255) actccGGTTTTCACGATTTGTTTGGTCTGCCCATCGATCCGCGCGGGAATATTATCGGCGTTCTGAtt < 1:29133743/65‑1 (MQ=255) aCGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGatt < 1:2777991‑M2/68‑4 (MQ=255) cGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGatt < 1:13059081‑M2/67‑4 (MQ=255) cGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGatt < 1:4482279‑M2/67‑4 (MQ=255) cGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGatt < 1:43170454‑M2/67‑4 (MQ=255) gCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattg < 1:46039465‑M2/67‑5 (MQ=255) gCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattg < 1:53431930‑M2/67‑5 (MQ=255) ccGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCTGCAATATTATCGGCGTGCTGattgcc < 1:21019963‑M2/68‑7 (MQ=255) ccGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgcc < 1:38271271‑M2/68‑7 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGtttgccgc > 1:1243604‑M2/1‑60 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgc > 1:38802600‑M2/1‑60 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTACTGattgccgc > 1:8433332‑M2/1‑60 (MQ=255) ttttCACGATTTCTTTGGTCTCCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcga < 1:8917278‑M2/68‑11 (MQ=255) cACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGc < 1:35557980/68‑1 (MQ=255) aCGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatc > 1:20688647‑M2/1‑53 (MQ=255) tCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgcgc > 1:30646637/1‑67 (MQ=255) tttGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCg < 1:200065/68‑1 (MQ=255) ttGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGc < 1:14409550/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:40558711/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:15321650/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa > 1:6310005/1‑68 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:5036048/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:3590789/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGGGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:57153608/68‑1 (MQ=255) tGGTCTGCCCAACGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatcgatgggcaga > 1:2329144‑M2/1‑43 (MQ=255) tGGGCTGCCCAACGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatcgatgggcaga > 1:40861496‑M2/1‑43 (MQ=255) ggTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAt < 1:36574261/68‑1 (MQ=255) ggTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAt < 1:47087924/68‑1 (MQ=255) ggTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAt > 1:37699501/1‑68 (MQ=255) ggTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAt > 1:40059073/1‑68 (MQ=255) ggTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGACTGCCGCGTGGGCCTGCGCCCGCAt > 1:9345553/1‑68 (MQ=255) gTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAtt > 1:44302661/1‑68 (MQ=255) tctcCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatcgatgggcagacc > 1:42117150‑M2/1‑40 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTTGGCCTGCGCCCGCAttc > 1:3462427/1‑67 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:29948767/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:659387/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:18873082/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:49196679/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:2281035/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:23534357/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:43386237/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:27230361/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCCGCAATATTATCGGCGTGCTGATTGCCCCGTGGGCCTGCGCCCGCATTg > 1:25562280/1‑68 (MQ=255) acTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:39747402/2‑68 (MQ=255) ccATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAgg < 1:26062505/67‑1 (MQ=255) aTCGCTCCGCGCGGCAATATTATCGGCGGGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCAt < 1:10079682/68‑1 (MQ=255) cGATCCCCGCGGCAATATTATCGCCGGGCTGattgccgcgcggatcgatgggcagaccaaagaaatcg > 1:11314868‑M2/1‑31 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:49654820/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:47954500/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:55448805/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:56468905/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:37248683/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:14881625/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:17424640/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:18350358/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:32094381/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:28360959/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCGGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:51404924/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCCGCGTGCTGATTGCCGCGTGGGCCTGCGACCGCATTGAAGGCATGGt > 1:52157894/1‑68 (MQ=255) aTCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:33674480/1‑67 (MQ=255) tCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgc > 1:50988060/1‑68 (MQ=255) tCCGAGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgc > 1:31084675/1‑68 (MQ=255) cgcgcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgcg > 1:49885165/1‑67 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:3639164/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:4856523/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:39179266/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgcc > 1:26554435/1‑66 (MQ=255) gcgGCAATATTATCGGCGGGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:46351097/68‑1 (MQ=255) gCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCttt > 1:14110937/1‑68 (MQ=255) gCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCttt > 1:32461538/1‑68 (MQ=255) aaTATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTAt < 1:45554955/68‑1 (MQ=255) aaTATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTAt > 1:41283200/1‑68 (MQ=255) tatCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCgg > 1:54937729/1‑68 (MQ=255) tatCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCgg > 1:35075694/1‑68 (MQ=255) tatCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCgg > 1:8168046/1‑68 (MQ=255) tatCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCgg > 1:42751468/1‑68 (MQ=255) tatCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCgg > 1:21593476/1‑68 (MQ=255) cGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACg > 1:33204646/1‑68 (MQ=255) cGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACg > 1:22049852/1‑68 (MQ=255) cGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACg > 1:55813722/1‑68 (MQ=255) cGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACg > 1:18051305/1‑68 (MQ=255) cGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGC‑TTATGCCGGACGa > 1:29567383/1‑68 (MQ=255) ggCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:3177579/1‑68 (MQ=255) ggCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa < 1:10596516/68‑1 (MQ=255) ggCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:54493914/1‑68 (MQ=255) ggCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:51782959/1‑68 (MQ=255) ggCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:41642401/1‑68 (MQ=255) gCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:16353618/1‑67 (MQ=255) gCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:19276206/1‑67 (MQ=255) cgagCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGAt < 1:5252886/64‑1 (MQ=255) cGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTCTGCCGGACGAt < 1:4761984/67‑1 (MQ=255) cGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGAt < 1:34162138/67‑1 (MQ=255) cGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGAt < 1:57828860/67‑1 (MQ=255) cGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGAt < 1:15554377/67‑1 (MQ=255) gTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGAtct < 1:43747492/68‑1 (MQ=255) gCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGAtctc < 1:7331428/67‑1 (MQ=255) gCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGATCTCg < 1:16787653/68‑1 (MQ=255) tGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGATCTCGAc < 1:53849829/68‑1 (MQ=255) | ACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGATCTCGACA > CP009273/2540663‑2540797 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |