| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2540715 | 357 (0.510) | 30 (0.050) | 7/94 | NT | 7.1% | coding (684/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system |
| ? | CP009273 | = 2540730 | 484 (0.820) | coding (699/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system | |||||
Only 100 of 704 total aligned reads displayed.
AGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGC > CP009273/2540649‑2540782 | aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:54528908/1‑68 (MQ=255)aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:26651923/1‑68 (MQ=255)aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:33238541/1‑68 (MQ=255)aGCGACCACCGGTTAATACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:3253220/1‑68 (MQ=255) gCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAatat > 1:51631442/1‑68 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:46470108/65‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:25259374/65‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:16945931/65‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:3797132/65‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:4222556/65‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAAtatt < 1:45217302/67‑1 (MQ=255) gACCACCGGTAACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:27161951/65‑1 (MQ=255) ggTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGt > 1:288573/1‑68 (MQ=255) tactacGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGc < 1:41990452/67‑1 (MQ=255) tactacGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGc < 1:30236986/67‑1 (MQ=255) cTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGa < 1:32260149‑M2/68‑2 (MQ=255) tACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGat > 1:34656102‑M2/1‑66 (MQ=255) tACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGat < 1:9425870‑M2/68‑3 (MQ=255) aCGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGatt < 1:21349946‑M2/68‑4 (MQ=255) aCGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGatt < 1:2777991‑M2/68‑4 (MQ=255) cGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGatt < 1:4700575‑M2/67‑4 (MQ=255) gCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattg < 1:20179842‑M2/67‑5 (MQ=255) gggtTTTCACTATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgcc > 1:48339281‑M2/2‑61 (MQ=255) cGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgcc > 1:4144597‑M2/1‑61 (MQ=255) cGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgcc > 1:57392687‑M2/1‑61 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGGGGCAATATTATCGGCGTGCTGattgccgc > 1:18056617‑M2/1‑60 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGtttgccgc > 1:1243604‑M2/1‑60 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgc > 1:30711916‑M2/1‑60 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgc > 1:50394336‑M2/1‑60 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgc > 1:48736797‑M2/1‑60 (MQ=255) ttttCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGt > 1:40550916/1‑68 (MQ=255) tcccGATTTCTTTGGCCTGCCCATCGAGCCGCGCGGCAATATAATCGGCGTGCTGATTGCCGCGTggg < 1:43539072/65‑1 (MQ=255) tCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTggg < 1:1913154/68‑1 (MQ=255) cACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGc < 1:52503518/68‑1 (MQ=255) cACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGc < 1:47664219/68‑1 (MQ=255) cACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGc < 1:21011551/68‑1 (MQ=255) aCGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatc > 1:15004407‑M2/1‑53 (MQ=255) aCGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatc > 1:20688647‑M2/1‑53 (MQ=255) aCGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatc > 1:27423533‑M2/1‑53 (MQ=255) cGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTggg > 1:8748980/1‑65 (MQ=255) tCTTTGGTCTGCCCATCGATCCGCGCGGCAAtatt < 1:7498449/35‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:15321650/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:54895384/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:56343121/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:35299675/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa > 1:49708086/1‑68 (MQ=255) tGGTCTCCCCATCGATCCGCGCGGCAATATTATCGGCGGGCTGattgccgcgcggatcgatgggcaga > 1:15447211‑M2/1‑43 (MQ=255) tGGGCGGCCCACCGATCCCCGCGGCAATATTATCGGCGTGCGGattgccgcgcggatcgatgggcaga > 1:291772‑M2/1‑43 (MQ=255) ggTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAt > 1:40059073/1‑68 (MQ=255) gTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAtt > 1:25975226/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCTATcagcacgccgataatattgccgcgcggatggatgggcagacca > 1:31717934‑M1/1‑25 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATcagcacggcgataatattgccgcgcggatcgatgggcagccca > 1:4392844‑M1/1‑25 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:38371867/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:49516345/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:18600449/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:50033861/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:53858799/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:8305568/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:52041696/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:2281035/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:21967564/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:44690429/1‑68 (MQ=255) acTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:39747402/2‑68 (MQ=255) ccATCGATCCGCGCGGCAATcagcacgccgataatattgccgcgcggatcgatggggagaccaaagaa > 1:14153639‑M1/1‑20 (MQ=255) ccATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAgg < 1:39241495/67‑1 (MQ=255) ccATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAgg < 1:14694662/67‑1 (MQ=255) ccATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGc < 1:10666841/68‑1 (MQ=255) ccATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGc > 1:51151705/1‑68 (MQ=255) ccATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGc > 1:40734762/1‑68 (MQ=255) ccATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGc < 1:28359512/68‑1 (MQ=255) ccAGCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAgg < 1:19814900/67‑1 (MQ=255) aTCGCTCCGCGCGGCAATATTATCGGCGGGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCAt < 1:10079682/68‑1 (MQ=255) aTCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCAt < 1:11321904/68‑1 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:55448805/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:55681865/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt < 1:3127235/68‑1 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:33702674/1‑68 (MQ=255) gATCCGCGCGACAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgt > 1:45832893‑M1/1‑15 (MQ=255) tCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgc > 1:6326797/1‑68 (MQ=255) tCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgc > 1:6865263/1‑68 (MQ=255) cgcgcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaa > 1:41082530‑M1/1‑11 (MQ=255) gcgcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgcc > 1:34294832/1‑68 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagcccaaagaactcgtgaaaacc > 1:9193565‑M1/1‑8 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:3651533/68‑1 (MQ=255) ggCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccgg < 1:57950371‑M1/68‑63 (MQ=255) ggCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccgg < 1:46056690‑M1/68‑63 (MQ=255) ggCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccg > 1:35883118‑M1/1‑6 (MQ=255) cAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggc < 1:23274481‑M1/67‑64 (MQ=255) aaTcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgt > 1:53300251‑M1/1‑3 (MQ=255) aaTcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgt < 1:36345583‑M1/68‑66 (MQ=255) aaTcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgt < 1:37352680‑M1/68‑66 (MQ=255) aaTcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcg < 1:13059081‑M1/67‑65 (MQ=255) aaTcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcg < 1:43170454‑M1/67‑65 (MQ=255) aaTcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcg < 1:45579388‑M1/67‑65 (MQ=255) aaTcagcacgccgataataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccgg < 1:17678306‑M1/68‑66 (MQ=255) aaTATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTAt < 1:23423187/68‑1 (MQ=255) aTcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgta > 1:56830791‑M1/1‑2 (MQ=255) tcagcccgcagataatattgccgcgcggatcgttgggcagaccaaagaaatcgtgaaaaccggcgtag < 1:29905358‑M1/68‑68 (MQ=255) tcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgtag < 1:24405607‑M1/68‑68 (MQ=255) tcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgtag < 1:16373865‑M1/68‑68 (MQ=255) | AGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGC > CP009273/2540649‑2540782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |