| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4382210 | 239 (0.340) | 18 (0.030) | 13/96 | NT | 7.2% | noncoding (34/76 nt) | glyV | tRNA‑Gly |
| ? | CP009273 | = 4382323 | 257 (0.430) | noncoding (35/76 nt) | glyX | tRNA‑Gly | |||||
Only 100 of 484 total aligned reads displayed.
ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCAC > CP009273/4382143‑4382277 | aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:56593469‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:29674109‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:10074159‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:54123326‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:40267252‑M1/68‑1 (MQ=255) gCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCc < 1:27546945‑M2/68‑2 (MQ=255) aaaTTCCGCAATGAAAAATAAGAAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:50800943‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTCCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:3832725‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:35358829‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:41556840‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:16012835‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:34527864‑M2/1‑63 (MQ=255) aaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggt > 1:20545206‑M2/1‑62 (MQ=255) tACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgt > 1:56326065‑M2/1‑59 (MQ=255) tACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgt > 1:58005344‑M2/1‑59 (MQ=255) tACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgt > 1:15232273‑M2/1‑59 (MQ=255) tACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgt > 1:40686123‑M2/1‑59 (MQ=255) cGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCgggg < 1:17535027/68‑1 (MQ=255) cGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCgggg < 1:45028043/68‑1 (MQ=255) aaGCAAAATTAAGTAGAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcg < 1:13675141/68‑1 (MQ=255) aaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGtt < 1:36622328/68‑1 (MQ=255) ttAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCg > 1:57691078/1‑68 (MQ=255) ttAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCg < 1:474712/68‑1 (MQ=255) tAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGa > 1:43048072/1‑68 (MQ=255) aaGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg < 1:28608177/68‑1 (MQ=255) aaGTAGTACGCGGGAATAGCTCACTGGCTAGAGCACGCCCTTGCcaagggcgtgctctaccaactgag > 1:21630002‑M2/1‑44 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:1969609/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:54855631/1‑66 (MQ=255) cccacgcGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactgagctat > 1:53133696‑M2/4‑40 (MQ=255) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCTGGGTCGGGAGTTCGTGtcgc > 1:25295074/1‑66 (MQ=14) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:12570590/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:1645547/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:33423404/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:18436578/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:12849715/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct < 1:36094100/67‑1 (MQ=39) aCGCGGGAATAGCTCAGTTGGTAGCGCACGCCCTTGCCAAGCTCGGGGTCGCCAGTTCGAGTCTCgat > 1:26794271/1‑66 (MQ=11) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCg < 1:54615665/66‑1 (MQ=33) gggAATAGCTCAGTTGGTAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgct > 1:9185321‑M1/1‑32 (MQ=255) gggAATAGCTCAGTTGGTACAGCACGACCTTGgcaaggtcgtgctctacaaactgagctattcccg < 1:57288019‑M1/66‑35 (MQ=255) gCTCAGTTGGTAGAGCACGACCTTGgccaggtcgtgctctaccaactgagctattcccggttgggtgg > 1:21367283‑M1/1‑25 (MQ=255) tCAGTTGGTAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtgggtgg > 1:12228321‑M1/1‑23 (MQ=255) tCAGTTGGTAGAGCACGACCTTGgcaaggtcgtgcgctaccaactgaggtattcccgcgtactactta > 1:34060000‑M1/1‑23 (MQ=255) tGGTAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaatttt > 1:41955906‑M1/1‑18 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCTGCTCCAAAATTTGaaaa > 1:46095093/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa > 1:31034378/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATGTGaaaa > 1:44011556/1‑68 (MQ=14) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAg > 1:10617008/1‑68 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCCCGAGTTCGAGTCACGTTTCCCCCTCCAAAATTTTaaaac > 1:22816867/1‑67 (MQ=11) gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaatt > 1:20323246/1‑66 (MQ=14) gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCACGTTTCCCGCTCCAAAATTTGAAAAGt > 1:492781/1‑68 (MQ=25) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:42461065/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:5008314/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:11595626/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:46789052/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:42766967/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:32697028/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:2088942/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:55579423/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:53584765/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:2744736/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt > 1:41069022/1‑66 (MQ=35) cACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtaat > 1:48003362/1‑65 (MQ=25) cACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt > 1:28082309/1‑65 (MQ=35) aCGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagc > 1:52570624‑M1/1‑9 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgct < 1:27227764/67‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgc < 1:1413813/66‑1 (MQ=39) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:14632854/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:8621716/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:24738857/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:6602268/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:23639553/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGGCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:803058/68‑1 (MQ=255) aCCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaatt > 1:52270382‑M1/1‑6 (MQ=255) aCCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaatt > 1:36506038‑M1/1‑6 (MQ=255) aCCTTGCCAAGGTCGGGGTCTCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGATGCat > 1:45553015/1‑67 (MQ=14) aCCTTGCCAAGGTCGGGGTCGCGATTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:711447/66‑1 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagcttttaccgcgtactacttaattttgctttcgtaattt > 1:48609419‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcacttt > 1:8864320‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcacttt > 1:24283391‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcacttt > 1:3502330‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcacttt < 1:9647410‑M1/68‑64 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgatttggagcacttt > 1:38048662‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtatgtgctttggagcacttt > 1:30586559‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtgggtggtctgtgctttgcagcacttt > 1:39051289‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtgggtggtctgtgctttgcagcacttt > 1:22173006‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtagtacgtattttaggtttagtaattt > 1:26485765‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:35635382‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:55148781‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattc > 1:29011593‑M1/1‑5 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaaa < 1:29905273/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaaa > 1:4347419/1‑68 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaa < 1:57406681/67‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTACCGCTCCAAAATTTGAAAAGTCCTGCaac > 1:25981941/1‑67 (MQ=14) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:1110773/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:9923604/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:18057920/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:32133422/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:51448116/68‑1 (MQ=255) ggcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcacttttcaa < 1:39699933‑M1/68‑68 (MQ=255) | ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCAC > CP009273/4382143‑4382277 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |