| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 64557 | 549 (0.780) | 47 (0.080) | 13/94 | NT | 8.2% | coding (1224/2352 nt) | polB | DNA polymerase II |
| ? | CP009273 | = 64577 | 591 (1.010) | coding (1204/2352 nt) | polB | DNA polymerase II | |||||
Only 100 of 1178 total aligned reads displayed.
AGGTGCGGATGATCGACGGGTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAT > CP009273/64490‑64624 | aGGTGCGGATGATCGACGGGTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGC < 1:29880508‑M1/68‑1 (MQ=255)aGGGGCGGATGATCGACGGGTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGC < 1:49356109‑M1/68‑1 (MQ=255) ggTGCGGATGATCGACGGGTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGcc > 1:21713163/1‑68 (MQ=255) ggTGCGGATGATCGACGGGTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGcc > 1:28950945/1‑68 (MQ=255) ggTGCGGATGATCGACGGGTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGcc > 1:25943589/1‑68 (MQ=255) ggTGCGGATGATCGACGGGTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGC > 1:27478580‑M1/1‑67 (MQ=255) atgatCGACGGGTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAAt > 1:42471922/1‑67 (MQ=255) atgatCGACGGGTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAAt < 1:16992919/67‑1 (MQ=255) atgatCGACGGGTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAAt > 1:40452893/1‑67 (MQ=255) tgatCGACGGGTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATcc < 1:51361417/68‑1 (MQ=255) tgatCGACGGGTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATcc > 1:46427094/1‑68 (MQ=255) tgatCGACGGGTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATc < 1:42727058/67‑1 (MQ=255) tCGACGGGTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATc < 1:47617536/68‑1 (MQ=255) cGGGTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGt > 1:43660136/1‑68 (MQ=255) ggTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTa > 1:12579239/1‑67 (MQ=255) aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCg > 1:50376354‑M2/1‑67 (MQ=255) aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCg > 1:7740363‑M2/1‑67 (MQ=255) aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCg > 1:3479235‑M2/1‑67 (MQ=255) aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCg > 1:3409354‑M2/1‑67 (MQ=255) gCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccag < 1:2420675‑M2/68‑6 (MQ=255) cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCggctacgtgatgggttcacggccagg > 1:9420912‑M1/1‑42 (MQ=255) cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTTGCCgccagg < 1:41006622‑M2/68‑7 (MQ=255) cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg < 1:17926709‑M2/68‑7 (MQ=255) cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg < 1:51996509‑M2/68‑7 (MQ=255) ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg > 1:36379952‑M2/1‑61 (MQ=255) ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg > 1:16061010‑M2/1‑61 (MQ=255) tttaATAGGCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccaggg > 1:11994147‑M2/1‑61 (MQ=255) ttgtataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGGGAATCCATCACGTAGCCGCCAgg < 1:36689376/64‑1 (MQ=255) tttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggc > 1:54802837‑M2/1‑60 (MQ=255) ttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggct > 1:35152539‑M2/1‑59 (MQ=255) ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg > 1:39951069/1‑67 (MQ=255) ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg > 1:45365275/1‑67 (MQ=255) ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg > 1:316812/1‑67 (MQ=255) ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg > 1:55444394/1‑67 (MQ=255) taGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGc > 1:43097293/1‑68 (MQ=255) aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCggctacgtgatggattcacggccaggggtttat > 1:33461493‑M1/1‑35 (MQ=255) aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg > 1:27118025/1‑68 (MQ=255) aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg > 1:30507591/1‑68 (MQ=255) tCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGt > 1:46021784/1‑67 (MQ=255) ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttatgat > 1:57908986‑M2/1‑52 (MQ=255) ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc > 1:32490260/1‑68 (MQ=255) ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc > 1:6250126/1‑68 (MQ=255) ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc > 1:50948722/1‑68 (MQ=255) ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc > 1:19639798/1‑68 (MQ=255) ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc > 1:22432811/1‑68 (MQ=255) ccagcaccagcaCTGAATCATAAAGCCCTGGCCGGGAATCCATCACGTAGCCgccagggctttatgat > 1:19106709‑M2/1‑52 (MQ=255) cagcaccagcacTGAATCATAAACCCCTGTCCGGCAAGCCATCCCGTAGCCGCCAGGGCTGGCGTgcg < 1:20109164/68‑1 (MQ=255) accagcacTGAATCATAAAGCCCTGGCggctacgtgatggattcgcggccagggctttatgattcagt > 1:57622491‑M1/1‑27 (MQ=255) accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg > 1:44483540/1‑67 (MQ=255) accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg > 1:26412519/1‑67 (MQ=255) accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg > 1:15109325/1‑67 (MQ=255) accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg > 1:810823/1‑67 (MQ=255) cacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACt > 1:20723866/1‑67 (MQ=255) acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTc > 1:15641405/1‑68 (MQ=255) acTGAATCATAAAGCCCTGGCCGGGAATCCATCACGTAGCCgccagggctttatgattcagtgctggt > 1:10604121‑M2/1‑41 (MQ=255) aTCATAAAGCCCTGGCggctacgtgatggattcacggccagggctttatgattcagtgctggtgctgg > 1:39546378‑M1/1‑16 (MQ=255) aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga < 1:1120218/68‑1 (MQ=255) aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga > 1:30980107/1‑68 (MQ=255) cATAATGCCGTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCgaga < 1:5723537/68‑1 (MQ=255) aaaagCCCGGGCCGTGAATCCATCACGTACCCgccagggctttatgattcagtgctggtgctggacta > 1:17433166‑M2/2‑32 (MQ=255) aaaGCCCTGGCggctacgtgatggattcccggccagggctttatgattcagtgctggtgctggactat > 1:41431481‑M1/1‑11 (MQ=255) aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCCCTTCGCCGAGATTa > 1:38507015/1‑68 (MQ=255) aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa > 1:3905879/1‑68 (MQ=255) aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa > 1:55966099/1‑68 (MQ=255) aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa > 1:14080279/1‑68 (MQ=255) aGCCCTGGCggctacgtgatggattcacggccagggctttatgattcagtgctggtgctggactataa > 1:28492491‑M1/1‑9 (MQ=255) aGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAgg < 1:24907399/68‑1 (MQ=255) aGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAg > 1:48768068/1‑67 (MQ=255) gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc > 1:37769898/1‑68 (MQ=255) gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc > 1:44135619/1‑68 (MQ=255) gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc > 1:54000004/1‑68 (MQ=255) cccTGGCggctacgtgatggattcacggccagggctttatgattcagttctggtgctggactataaaa > 1:27834094‑M1/1‑7 (MQ=255) cccTGGCggctacgtgatggattcacggccagggctttatgattcagtgctggtgctggactataaaa > 1:47075750‑M1/1‑7 (MQ=255) cccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc > 1:22926648/1‑67 (MQ=255) cccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc > 1:36127509/1‑67 (MQ=255) ccTGGCggctacgtgatggattcacggccagggctttatgattcagtgctggtgctggactataaaag < 1:14716880‑M1/68‑63 (MQ=255) ccTGGCggctacgtgatggattcacggccagggctttatgattcagtgctggtgctggactataaaag < 1:32181113‑M1/68‑63 (MQ=255) ccTGGCggctacgtgatggattcacggccagggctttatgattcagtgctggtgctggactataaaag < 1:52334937‑M1/68‑63 (MQ=255) ccTGGCggctacgtgatggattcacggccagggctttatgattcagtgctggtgctggactataaaag < 1:18550165‑M1/68‑63 (MQ=255) ccTGGCggctacgtgatggattcacggccagggctttatgattcagtgctggtgctggactataaaa > 1:10460910‑M1/1‑6 (MQ=255) ccTGGCggctacgtgatggattcacggccagggctttatgattcagtgctggtgctggactataaaa > 1:13751355‑M1/1‑6 (MQ=255) ccTGGCggctacgtgatggattcacggccagggctttatgattcagtgctggtgctggactataaaa > 1:45655261‑M1/1‑6 (MQ=255) ccTGGCggctacgtgatggattcacggccagggctttatgattcagtgctggtgctggactataaaa > 1:1640093‑M1/1‑6 (MQ=255) ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTGGCCGAGATTAGgcgc > 1:10019713/1‑68 (MQ=255) ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc > 1:418478/1‑68 (MQ=255) ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc > 1:13152172/1‑68 (MQ=255) ccGGGCCGTGAATCCCTCACGTAGCCgccagggctttatgattcagtgctggtgctggactataaaag > 1:23892857‑M2/1‑26 (MQ=255) cTGGCggctacgtgatggattcacggccagggctttatgattcagtgctggtgctggactataaaagc < 1:5325001‑M1/68‑64 (MQ=255) cTGGCggctacgtgatggattcacggccagggctttatgattcagtgctggtgctggactataaaagc < 1:48398206‑M1/68‑64 (MQ=255) cTGGCggctacgtgatggattcacggccagggctttatgattcagtgctggtgctggactataaaagc < 1:25441318‑M1/68‑64 (MQ=255) tGGCCGTGAATCCATCACGTAGCCGCCGGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa < 1:58102982/68‑1 (MQ=255) tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa < 1:37023236/68‑1 (MQ=255) tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa < 1:8536891/68‑1 (MQ=255) tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa < 1:21215322/68‑1 (MQ=255) tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa < 1:33775364/68‑1 (MQ=255) tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa < 1:5293620/68‑1 (MQ=255) tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa < 1:50045102/68‑1 (MQ=255) cggctacgtgatggattcacggccagggctttatgattcagtgctggtgctggactataaaagcctgt > 1:68264‑M1/1‑1 (MQ=255) ccGTGAATCCATCACGTAGCCgccagggctttatgattcagtgctggtgctggactataaaagcctgt < 1:32722470‑M2/68‑48 (MQ=255) ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt > 1:56828688/1‑68 (MQ=255) | AGGTGCGGATGATCGACGGGTACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAT > CP009273/64490‑64624 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |