| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 691855 = | 590 (0.840) | 86 (0.130) +TAATG |
4/102 | NT | 12.3% | intergenic (+123/+31) | ubiF/glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| ? | CP009273 | 691998 = | 752 (1.070) | noncoding (75/75 nt) | glnV | tRNA‑Gln | |||||
Only 100 of 768 total aligned reads displayed.
TCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGG > CP009273/691788‑691922 | agcggtaaggcaccggtttgtgataccggcattcccaggttcgaatcctcgtaccccagccacattaa < 1:41381601‑M1/1‑1 (MQ=255)agcggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaa < 1:4967206‑M1/1‑1 (MQ=255) gcggtaaggcaccggtttctgataccggcattccgaggttcgaatcctcgtaccccagccacattaaa < 1:39742331‑M1/2‑1 (MQ=255) ggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaaaaa < 1:19015333‑M1/4‑1 (MQ=255) ggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccaaattaaaaa < 1:25145558‑M1/4‑1 (MQ=255) ggtaaggcaccggattctgattccggcattccgagcttcgaatcctcgtacaccagccaaattaaaaa < 1:45776284‑M1/4‑1 (MQ=255) gtaaggcaccggtttttgattccggcattcccaggttcgaatcctcgtaccccagccacattaaaaaa < 1:25720353‑M1/5‑1 (MQ=255) aTCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCaaaaa > 1:29506202/1‑68 (MQ=255) tCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCaaaaa > 1:16790591/1‑67 (MQ=255) ggcaccggattctgcttccggcattccgaggttcgaatcctcgtaccccagccacattaTAAAAgcg < 1:49879586‑M1/8‑2 (MQ=255) ggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:16268800‑M1/9‑1 (MQ=255) ggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:48972205‑M1/9‑1 (MQ=255) ggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:20242832‑M1/9‑1 (MQ=255) gcaccggattctgattccggcattccgaggttcgaatcctcgtaccgcagccacattaTTAAAgctgg < 1:53521024‑M1/10‑3 (MQ=255) gcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAaagcacc < 1:11488903‑M1/10‑4 (MQ=255) gcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:54422573‑M1/9‑1 (MQ=255) gcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:18707141‑M1/9‑1 (MQ=255) gcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:19952735‑M1/9‑1 (MQ=255) cATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCg < 1:51615176/67‑1 (MQ=255) cATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCg > 1:20711573/1‑67 (MQ=255) gAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGaa > 1:17780821/1‑68 (MQ=255) aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGc > 1:47505022/1‑68 (MQ=255) aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGc > 1:36182306/1‑68 (MQ=255) gATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGa > 1:11004843/1‑68 (MQ=255) aaGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCt < 1:55621148/68‑1 (MQ=255) aGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtt < 1:33090232/68‑1 (MQ=255) gACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt > 1:46975020/1‑68 (MQ=255) gACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt > 1:13696740/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:24576921/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:28196948/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:29121330/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:47869997/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:42299952/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:42591569/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:52001523/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:57460522/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:22705576/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:21820125/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:1740495/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:1537642/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:14507210/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTAGACGAAGCGAGCtttt > 1:1413358/1‑68 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttttt > 1:27534192/1‑68 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttttt > 1:56132347/1‑68 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:30128183/66‑1 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:2149330/66‑1 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:3178802/66‑1 (MQ=255) tCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAt > 1:9034450/1‑68 (MQ=255) tCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAt < 1:54931487/68‑1 (MQ=255) cAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtg > 1:9390503/1‑68 (MQ=255) cAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAt < 1:46314339/67‑1 (MQ=255) aCATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg < 1:35362995/68‑1 (MQ=255) aCATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg < 1:45039273/68‑1 (MQ=255) cATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:33973828/1‑67 (MQ=255) aTCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:43396898/1‑66 (MQ=255) aTCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGc < 1:27117809/68‑1 (MQ=255) tCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:37413123/1‑65 (MQ=255) tCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:24106070/1‑65 (MQ=255) cGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTg > 1:8402611/1‑68 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTgggt < 1:22321710/68‑2 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTgggg < 1:10625464/68‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTgggg < 1:31455798/68‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:30708553/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:39133869/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:43840961/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:15670637/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:54026868/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:23267096/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:47226634/67‑1 (MQ=255) cGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTAc < 1:19539950/68‑1 (MQ=255) cGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTAc > 1:3352897/1‑68 (MQ=255) gACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACg < 1:5985/68‑1 (MQ=255) aCATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGa > 1:26043348/1‑68 (MQ=255) aCATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGa > 1:25557630/1‑68 (MQ=255) aCATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGa > 1:52464456/1‑68 (MQ=255) aCATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGa > 1:11975332/1‑68 (MQ=255) aCATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGa > 1:10018300/1‑68 (MQ=255) ttGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGa < 1:40232466/68‑1 (MQ=255) gaatgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGAt > 1:7444877/1‑67 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:26468589/1‑68 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:5078232/1‑68 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:28391189/1‑68 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:32527650/1‑68 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:22902695/1‑68 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:17035207/1‑68 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:6897764/1‑68 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:56698227/1‑68 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCCAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:5297344/1‑68 (MQ=255) cccagccacattaAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGaa < 1:36944375‑M1/54‑1 (MQ=255) aCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAcc < 1:4860025/68‑1 (MQ=255) cGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAcc > 1:504632/1‑67 (MQ=255) cGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAcc > 1:12585788/1‑67 (MQ=255) gCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTc < 1:38663697/68‑1 (MQ=255) aaaGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGa < 1:44443080/66‑1 (MQ=255) aaaGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGa < 1:38101469/66‑1 (MQ=255) aaaGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAAt > 1:7933/1‑68 (MQ=255) aaaGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAAt > 1:43199570/1‑68 (MQ=255) aGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGc < 1:40981808/68‑1 (MQ=255) aGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCGGGGGTACGAGGATTCGAACCTCGGAATGc < 1:1311572/68‑1 (MQ=255) gCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGcc > 1:34684482/1‑68 (MQ=255) | TCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGG > CP009273/691788‑691922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |