| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161581 | 326 (0.470) | 31 (0.060) | 14/82 | NT | 12.7% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162077 = | 188 (0.370) | coding (537/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
Only 100 of 547 total aligned reads displayed.
TTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCAAAA > CP009273/1161514‑1161646 | tGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt < 1:2054033/68‑1 (MQ=255) gTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:14522400/1‑66 (MQ=255) gTTAATAAATTTAAGGGGGACACCTTGACTACGCCATTGAAAAAGATTGTGATTGAACGCGGCGGt > 1:26565720/1‑66 (MQ=255) ttAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:41203119/1‑65 (MQ=255) ttAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:1246989/1‑65 (MQ=255) ttAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:6640120/1‑65 (MQ=255) ataaATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggt > 1:49651846/1‑68 (MQ=255) aaaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:10728317/1‑68 (MQ=255) aaaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCgactgg > 1:46703816‑M1/1‑62 (MQ=255) aaaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCtggggg > 1:33668163/1‑68 (MQ=255) aaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:7939555/1‑67 (MQ=255) tAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTgg < 1:37527268/68‑1 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTCGGCTGGaaa > 1:44466099/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGATAAAGATTGTGATTGTCGGCGGCGGTGCTGGGGGGCTGGAAAt > 1:25021047/1‑68 (MQ=39) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGcgctgcgggtgtagaaca > 1:44731542‑M1/1‑50 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCggcgggggtggaaa > 1:29369564‑M1/1‑53 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:39766936/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:35174048/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:30046041/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:46036588/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:13566708/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:52685459/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:14370733/1‑68 (MQ=255) ggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATg < 1:48573810/67‑1 (MQ=255) cACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCa > 1:23764482/1‑67 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAacac > 1:41566965/1‑68 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAacac > 1:40043096/1‑68 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAacac > 1:13959759/1‑68 (MQ=255) ttGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:36511914/1‑68 (MQ=255) tcactACGCCATTCAAAAACATTGCGATTGTCGGCGGCGGcgcgacgggtgtagaactctccgctga < 1:47595040‑M1/65‑28 (MQ=255) tGACTACGCCATTGAAATAGATTGTGATTGTCGGCGGCGGTGCTGGTTGGCTGGAAATGGCAAcaca < 1:55503572/67‑1 (MQ=39) tGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca < 1:16638825/67‑1 (MQ=255) gACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGc < 1:21351697/68‑1 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGggcgacgggtgtagaactctcagctgaatt > 1:55388598‑M1/1‑38 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:11095245/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:53407662/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:35967949/1‑65 (MQ=255) cTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTg > 1:35421339/1‑68 (MQ=255) tACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgg > 1:8675136/1‑68 (MQ=255) tACGCCATTCTAAAAGATTGAGATTGTCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgc < 1:4310540‑M1/68‑33 (MQ=255) cGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgggg < 1:55083757/68‑1 (MQ=255) cGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGGGGGCTGGAAATGGCAACACAGCTgggg < 1:33309204/68‑1 (MQ=255) gCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGc > 1:26112714/1‑68 (MQ=255) gCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGc < 1:1199464/68‑1 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGggcgccgggtgtagaactctccgctgaattgcacaa > 1:10265845‑M1/1‑32 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGcgcgccgggtgtagaa > 1:13057571‑M1/1‑32 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGcgcgactggtgtagaaatctccgctgaattgcaca > 1:28156956‑M1/1‑32 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGcgcgacgggtgtagaactctccgctgaaatgcacaa > 1:22719086‑M1/1‑32 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtactggtgtagaactctccgctgagttggacaa > 1:34180132‑M1/1‑35 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:44969286/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:45571205/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:53053549/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:27345834/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:11704612/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:44042380/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:5626076/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:15607752/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:40469366/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:21875427/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:22213939/1‑68 (MQ=255) aTTGAAAAAGATTGTGATTGTCGGCGGCGTTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATa < 1:32486899/68‑1 (MQ=255) aTTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATa > 1:36280212/1‑68 (MQ=255) tGAAAAAGATTGTGATTGTCGGCGGCGGTGCTTGTGGGCTGGAAATGGCAACACAGCTGGGGCATaa > 1:38812611/1‑67 (MQ=255) aaaaGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTg > 1:19638666/1‑68 (MQ=255) aaGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:4341601/1‑68 (MQ=255) aaGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:57464273/1‑68 (MQ=255) aGATTGTGATTGTCGGCGGCGGTGCgacgggtgtagaactctccgctgaattgcgccacgcgctcaa > 1:6146717‑M1/1‑25 (MQ=255) aGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCAGGAAATGGCAACACACCTGGGGCATAAGCTggg > 1:1723846/1‑67 (MQ=255) gattgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:16140605/1‑68 (MQ=255) attgtgattgtCGGCGGCGGggcgacgggtgtagaactctccgctgaattgcaccacgcggtcaagc > 1:54867600‑M1/1‑20 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:42152761/1‑67 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:5041640/1‑67 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:7429018/1‑67 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:2869774/1‑67 (MQ=255) gattgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgc > 1:47225780‑M1/1‑15 (MQ=255) gattgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgc < 1:7642656‑M1/68‑54 (MQ=255) gattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGa > 1:19400253/1‑68 (MQ=255) gattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGa > 1:18114212/1‑68 (MQ=255) attgtCGGCGGCGGTGCTGGTGGGGTCGAAATGGCATCACAGCTGGGGCATAAGCTGGGTCGCCAGaa > 1:25980337/1‑68 (MQ=255) attgtCGGCGGCGGTGCAGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaa > 1:8465415/1‑68 (MQ=255) tgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaccgcggtcaagcaactgcaca > 1:9204777‑M1/1‑12 (MQ=255) tgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcaca > 1:17815254‑M1/1‑12 (MQ=255) tgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcaca > 1:54315526‑M1/1‑12 (MQ=255) tgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaaaa > 1:52146504/1‑68 (MQ=255) tCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaaaaaa > 1:38518752/1‑68 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagc < 1:56451394‑M1/67‑59 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagc < 1:39227716‑M1/67‑59 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagc < 1:21222402‑M1/67‑59 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagc < 1:30843633‑M1/67‑59 (MQ=255) ggcggcggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAg > 1:5227487/1‑67 (MQ=255) gcggcggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGcc > 1:31365515/1‑68 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacg < 1:37068952‑M1/67‑63 (MQ=255) gcggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCaaa > 1:2465404/1‑68 (MQ=255) gcggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGACaaa > 1:18626073/1‑68 (MQ=255) cggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCaaa < 1:56794940/67‑1 (MQ=255) cggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCaaa < 1:27810104/67‑1 (MQ=255) cggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCaaa < 1:15059210/67‑1 (MQ=255) cggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACACAAGAAAAAAGCCaaa < 1:20838245/67‑1 (MQ=255) ggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacggtt < 1:20110117‑M1/67‑66 (MQ=255) ggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacggtt < 1:51372266‑M1/67‑66 (MQ=255) | TTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCAAAA > CP009273/1161514‑1161646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |