| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161581 | 326 (0.470) | 31 (0.060) | 14/82 | NT | 12.7% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162077 = | 188 (0.370) | coding (537/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
Only 100 of 399 total aligned reads displayed.
TGTTCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAC > CP009273/1162010‑1162143 | tGTTCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCggcggcggc > 1:57079531/1‑68 (MQ=255) ttCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGgcgc > 1:22119119/1‑68 (MQ=255) aatttacgggggtcacgtggcctacgccattcaaaaagattgggattgtcggcggcggCGCGACGGgt < 1:28748959‑M2/10‑1 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt > 1:52438028/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:28200246/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:11520182/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:43626034/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt < 1:18947165/68‑1 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:17807778/1‑68 (MQ=255) aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa > 1:7352819/1‑68 (MQ=255) aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa > 1:38930163/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:9762516/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:26791138/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:45817804/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:16212753/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:15494275/1‑68 (MQ=255) ccGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:1028999/1‑67 (MQ=255) cGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc < 1:50823163/68‑1 (MQ=255) cGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc < 1:43268006/68‑1 (MQ=255) ggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggCGCTGCGGGTGTAGAaca > 1:44731542‑M2/51‑67 (MQ=255) ggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggCGCGACGGGTGTAGAaca > 1:20818466‑M2/51‑67 (MQ=255) gCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc > 1:12522863/1‑67 (MQ=255) gCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc > 1:22947809/1‑67 (MQ=255) gCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc > 1:22560477/1‑67 (MQ=255) cAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAActct < 1:46470933/68‑1 (MQ=255) cAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAActct < 1:6025791/68‑1 (MQ=255) gtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggCGCGACGGGTGTAGAActct < 1:27800447‑M2/20‑1 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:6750341/1‑67 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:40172460/1‑67 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:34327426/1‑67 (MQ=255) gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa < 1:13354782/67‑1 (MQ=255) gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa < 1:760691/67‑1 (MQ=255) cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt > 1:55869659/1‑68 (MQ=255) gcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAtt < 1:23851404/68‑1 (MQ=255) gcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAtt > 1:29645086/1‑68 (MQ=255) gcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt < 1:49774741/67‑1 (MQ=255) actacgccattgaaaaagattgtgattgtcggcggcggCGCGACGGGTGTAGAAATCTCCGCTGAAtt > 1:35996459‑M2/39‑68 (MQ=255) gAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGc < 1:25493788/68‑1 (MQ=255) ccattgaaaaagattgtgattgtcggcggcggCGCGACGGGTGTAGAACTCTCAGCAGAAATGCACaa > 1:37833807‑M2/33‑68 (MQ=255) cAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAAc < 1:45439529/67‑1 (MQ=255) gTGAACATTGCGATTGTCGGCGGCGGCGCGCCGGGTGTAGATCTCTCCGCTGAATTGCACAACGCgg > 1:34716255/1‑67 (MQ=255) tcaaCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc < 1:16956307/66‑1 (MQ=255) tGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc > 1:43852671/1‑68 (MQ=255) tGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc > 1:48253909/1‑68 (MQ=255) gAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc < 1:12239848/67‑1 (MQ=255) gAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCAGCTGAATTGCACAACGCGGTct > 1:35761291/1‑67 (MQ=255) aaCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:18158671/1‑68 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAg < 1:41112083/68‑1 (MQ=255) attgtgattgtcggcggcggAGCGGCGGGTGTAGAAATCTCCGCAGAATTGCCCAACGCGGTCAAGCa > 1:47006650‑M2/21‑68 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:11111819/1‑68 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa < 1:7955915/68‑1 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa < 1:31071574/68‑1 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:865932/1‑68 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGCACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:38488138/1‑67 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:23270923/1‑67 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:52926796/1‑67 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:24791914/1‑67 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:30795773/1‑67 (MQ=255) tGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAAc < 1:55172391/68‑1 (MQ=255) gCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:50141488/1‑65 (MQ=255) gCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:56106861/1‑65 (MQ=255) gCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:26260189/1‑65 (MQ=255) gCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:706961/1‑65 (MQ=255) gCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:10562344/1‑65 (MQ=255) gCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:33167186/1‑65 (MQ=255) gCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACt < 1:44330355/68‑1 (MQ=255) gCGATTGTCGGCGGCGGCGCGACGGGTGCAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACt < 1:14737924/68‑1 (MQ=255) cGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACt > 1:31860336/1‑67 (MQ=255) gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc < 1:35326550‑M2/53‑1 (MQ=255) gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc < 1:57641773‑M2/53‑1 (MQ=255) gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc < 1:16501654‑M2/53‑1 (MQ=255) gATTGTCGGCGGCGGCGCGGCGGGGGTAGAACTGTCCTCTCAAGTGGGCAACGCGGTCTAGCAAATGc > 1:36805772/1‑68 (MQ=255) attgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc > 1:19689362‑M2/15‑67 (MQ=255) attgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc > 1:2159604‑M2/15‑67 (MQ=255) tgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACACCGCGGTCAAGCAACTGcaca > 1:9204777‑M2/13‑68 (MQ=255) tgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca < 1:39896610‑M2/56‑1 (MQ=255) tgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca < 1:20624503‑M2/56‑1 (MQ=255) tgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca > 1:54315526‑M2/13‑68 (MQ=255) gggcggcggCTCGACGTGTGTAGAACTCTCCGCTGAATTGCAGAACGCGTTCAAGCAACTGCACAGc < 1:39419697‑M2/58‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:21222402‑M2/58‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:56451394‑M2/58‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:14424964‑M2/58‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:42290006‑M2/58‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:39227716‑M2/58‑1 (MQ=255) gcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTAc > 1:36478295‑M2/8‑68 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:47357263‑M2/62‑1 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:413013‑M2/62‑1 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:9486681‑M2/62‑1 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:19533269‑M2/62‑1 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:42078419‑M2/62‑1 (MQ=255) gcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt > 1:13880316‑M2/5‑68 (MQ=255) cggCGCGTCGGGTGTAGAACTCTCCGCTGAATTGCACAACGGGGTCAAGCAACTGCACAGCTACGGt < 1:53630861‑M2/64‑1 (MQ=255) ggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt < 1:20175185‑M2/65‑1 (MQ=255) ggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt < 1:6356140‑M2/65‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:3258821/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:15936578/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:29971139/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:51603468/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:18638991/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:27443929/67‑1 (MQ=255) | TGTTCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAC > CP009273/1162010‑1162143 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |