| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1238033 = | 901 (1.290) | 38 (0.080) | 16/76 | NT | 7.1% | coding (504/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| ? | CP009273 | 1238051 = | 386 (0.810) | coding (486/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A | |||||
Only 100 of 1148 total aligned reads displayed.
TTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGA > CP009273/1237966‑1238100 | ttGGCATCCACTGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCg < 1:12660271/68‑1 (MQ=255) ggCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGc < 1:54882632/68‑1 (MQ=255) accgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaagggggaGGccc < 1:54536644‑M1/5‑1 (MQ=255) accgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGccc < 1:11102442‑M1/5‑1 (MQ=255) ccgagcaccttttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCg > 1:32453183‑M1/63‑68 (MQ=255) ccgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCg > 1:6834905‑M1/63‑68 (MQ=255) cgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaagggggcGGCCCg < 1:10003844‑M1/6‑1 (MQ=255) cGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATg < 1:38293226/68‑1 (MQ=255) ggTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGt < 1:45590208/68‑1 (MQ=255) accatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACATg > 1:28215780‑M1/57‑67 (MQ=255) accatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACATGt > 1:18586478‑M1/57‑68 (MQ=255) accatttctggctggcggtacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACAt > 1:11731556‑M1/57‑66 (MQ=255) aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGGCATGTCggg > 1:25137970/1‑67 (MQ=255) aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCggg > 1:33765836/1‑67 (MQ=255) aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCggg > 1:27619697/1‑67 (MQ=255) aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCggg > 1:2343172/1‑67 (MQ=255) aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCggg > 1:31409464/1‑67 (MQ=255) aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCggg > 1:37325281/1‑67 (MQ=255) aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGc < 1:22412693/68‑1 (MQ=255) cGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt < 1:26933772/68‑1 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCCCAACGTGCCTTCGGCCCGACATGTCGGGGCt > 1:6274891/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCCCAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:16115915/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGCCATGTCGGGCCt > 1:20327065/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:34166100/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:44670576/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:35417594/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:488414/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:36769436/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:39884834/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:42209838/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:24588268/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:13324855/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:8751969/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:14243852/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:7549820/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:1511562/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:1819008/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:26257570/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt > 1:23014347/1‑67 (MQ=255) gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGACCGACAAGTCGGGCCt > 1:35137487/1‑67 (MQ=255) tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCtgc > 1:19908308/1‑65 (MQ=255) tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTcc < 1:38955177/68‑1 (MQ=255) tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTcc < 1:5325119/68‑1 (MQ=255) tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTcc < 1:53810627/68‑1 (MQ=255) tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc > 1:32048635/1‑67 (MQ=255) tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc < 1:52537514/67‑1 (MQ=255) tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc > 1:30965448/1‑67 (MQ=255) tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc > 1:48391963/1‑67 (MQ=255) tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc > 1:56121425/1‑67 (MQ=255) tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc > 1:52014850/1‑67 (MQ=255) tCAGTGAAATCACCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTcc < 1:4529824/68‑1 (MQ=255) cAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAAGGTGCCTTGGGCCCGACATGTCGGGCCTTccc < 1:21242303/68‑1 (MQ=255) cAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTccc < 1:16775031/68‑1 (MQ=255) gAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTcccc < 1:49923184/65‑1 (MQ=255) gAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCt < 1:33502489/66‑1 (MQ=255) tCAGCATCGCATGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt < 1:29091523/68‑1 (MQ=255) tCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt < 1:10459026/68‑1 (MQ=255) tCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt < 1:30649024/68‑1 (MQ=255) tCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt < 1:41800540/68‑1 (MQ=255) tCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt < 1:47674865/68‑1 (MQ=255) tCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt > 1:15617038/1‑68 (MQ=255) tCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt < 1:5898812/68‑1 (MQ=255) ccAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt < 1:9244012/67‑1 (MQ=255) acgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCAt > 1:7916954‑M1/38‑68 (MQ=255) cAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCATGCCAt > 1:50442406/1‑67 (MQ=255) cAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACAAGTCGGGCCATACCCTTGCCagt > 1:57912745/1‑66 (MQ=255) cAGCATCGCAAGATTGCCTCCCCACAACGTGCATTCGGCCCGCCATGTCGGGGCTTCCCCTTGccct > 1:47337560/1‑65 (MQ=255) atgaaaccttcaccattgaatggcaaggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAAt > 1:39372248‑M1/33‑68 (MQ=255) aTCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAAt < 1:12100096/68‑1 (MQ=255) aTTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAgg > 1:4685630/1‑68 (MQ=255) ttGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAg < 1:40528361/66‑1 (MQ=255) ttGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAg < 1:32993744/66‑1 (MQ=255) ttGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGt < 1:5725761/68‑1 (MQ=255) ttGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGt < 1:55705072/68‑1 (MQ=255) gCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTGCCCATGCGAAGAAATAGTGAAGGttt > 1:49187005/1‑68 (MQ=255) gCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGtt > 1:5282240/1‑67 (MQ=255) ccattgaatggcaaggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTc < 1:25643874‑M1/48‑1 (MQ=255) cTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTc < 1:19191423/67‑1 (MQ=255) tgaatggcaaggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCAtt < 1:23885220‑M1/51‑1 (MQ=255) cacaACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCg > 1:51499346/1‑68 (MQ=255) ccGTGCCTTCGGCCCGACATGTCGGGCCTTACCCATGGCATTCAATGGGGATGGGTTCATTGACTAAc > 1:35987968/2‑68 (MQ=255) aCGTGCCTTCGGCCCGNCATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc > 1:29927313/1‑68 (MQ=255) aCGTGCCTTCGGCCCGCCATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc > 1:20755069/1‑68 (MQ=255) aCGTGCCTTCGGCCCGACATGTCGGGGCTTCCCCTTGCCAATCAAAGGTGGAGGATTCAATACGTAAc > 1:43634080/1‑68 (MQ=255) aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCTTTCAATGGTGAAGCTTACAGAGCGTacc > 1:50976244/1‑66 (MQ=255) aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGTAGGTTTCATTGCGTAAc > 1:34648091/1‑68 (MQ=255) aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc > 1:29423592/1‑68 (MQ=255) aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc > 1:46496288/1‑68 (MQ=255) aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc > 1:5667255/1‑68 (MQ=255) aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc > 1:45937285/1‑68 (MQ=255) aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc < 1:44083895/68‑1 (MQ=255) aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTAATTGCGTAAc > 1:55336595/1‑68 (MQ=255) aCGTGCCCTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATGGCGTAAc > 1:54198000/1‑68 (MQ=255) cGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc > 1:30307612/1‑67 (MQ=255) cGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCATGCCATTCAATGGTGAAGGTTTAATTGCGTAAc > 1:1726894/1‑67 (MQ=255) gCCTTCGGCCCGCCATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGGTTCATTGCCTAACgcca > 1:42889083/1‑68 (MQ=255) ccTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgcca > 1:21519124/1‑67 (MQ=255) ggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccag < 1:14717787‑M1/63‑1 (MQ=255) cTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccag < 1:41126095/67‑1 (MQ=255) ttCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccagcc < 1:13905093/68‑1 (MQ=255) | TTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGA > CP009273/1237966‑1238100 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |