New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1238033 =901 (1.290)38 (0.080) 16/76 NT 7.1% coding (504/915 nt) ldcA murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A
?CP009273 1238051 = 386 (0.810)coding (486/915 nt) ldcA murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A

Only 100 of 1053 total aligned reads displayed.

CGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGG  >  CP009273/1237984‑1238118
                                                                   |                                                                   
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCTGCCCGACATGTCGGGCCtt                                                                    >  1:47677055/1‑68 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGCCATGTCGGGCCt                                                                     >  1:5270357/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGCCATGTCGGGCCt                                                                     >  1:14473054/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGCCATGTCGGGCCt                                                                     >  1:20327065/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCtt                                                                    <  1:12555194/68‑1 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCtt                                                                    <  1:56117382/68‑1 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCtt                                                                    >  1:16537960/1‑68 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:27693191/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:36769436/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:29763159/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:31481069/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:3470834/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:37476290/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:39062653/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:39884834/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:44519376/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:47346600/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:48219241/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:488414/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:49212916/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:52445110/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:54568670/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:56960033/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:7897145/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:843816/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:9175880/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:10452845/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCCGGCCt                                                                     >  1:21320311/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACAAGTCTGGCCtt                                                                    >  1:51346941/1‑68 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCATCGGCCCCACATGACCGGCCt                                                                     >  1:43024791/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCAACAACGTGCCTTCGGCCCGCCAAGTCGGGCCt                                                                     >  1:31001205/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGAATGCCTACCCACAACGTGCCTTCGGCCCGCGAGGTCGGTCCt                                                                     >  1:6647621/1‑67 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCtta                                                                   >  1:6950246/1‑66 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTcc                                                                  <  1:19545590/68‑1 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTcc                                                                  <  1:53810627/68‑1 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTcc                                                                  <  1:49906326/68‑1 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc                                                                   >  1:55683606/1‑67 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc                                                                   >  1:53174305/1‑67 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc                                                                   >  1:42285043/1‑67 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc                                                                   >  1:33525577/1‑67 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc                                                                   >  1:15859100/1‑67 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATCTCGGGCCTTc                                                                   >  1:28685364/1‑67 (MQ=255)
    ctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaggcccgacatgtcgggccTTcc                                                                  <  1:14781692‑M2/4‑1 (MQ=255)
        cgttacgcaatgaaaccttcaccattgaatggcaaggggaaggcccgacatggcgggccTTCCCCtt                                                              <  1:18323475‑M2/8‑1 (MQ=255)
          aaTCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGcc                                                           <  1:4144295/68‑1 (MQ=255)
          aaTCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGc                                                            <  1:13129670/67‑1 (MQ=255)
           tacgcaatgaaaccttcaccattgaatggcaaggggaaggcccgacatgtcgggccTTCCCCTTGcc                                                           <  1:57589780‑M2/11‑1 (MQ=255)
           tacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACATGTCGGGCCTTCCCCTTGcc                                                           >  1:55074173‑M1/39‑67 (MQ=255)
           aTCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCa                                                          >  1:18719309/1‑68 (MQ=255)
            tCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGCCATGTCGGGCCTTCCCCTTGCCAt                                                         >  1:3516814/1‑68 (MQ=255)
            tCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt                                                         <  1:12048874/68‑1 (MQ=255)
            tCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt                                                         <  1:33268863/68‑1 (MQ=255)
            tCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt                                                         <  1:29392846/68‑1 (MQ=255)
            acgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCAt                                                         >  1:23661963‑M1/38‑68 (MQ=255)
            acgcaatgaaaccttcaccattgaatcgcaaggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCAt                                                         >  1:2268561‑M1/38‑68 (MQ=255)
               gCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCa                                                      >  1:17836850/1‑68 (MQ=255)
               gCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCCACATGTCGGGCCATCCCCCTGCCAttaa                                                      >  1:33852688/1‑66 (MQ=255)
                 ttCGAAATATTGCCTCCCCACAACGTGCCTTCGGCCCGACTTGTCGGGCCTTCCCCTTGCCATTCAAt                                                    <  1:35445526/67‑1 (MQ=255)
                        cttcaccattgaatggccaggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAg                                             >  1:32518993‑M1/26‑68 (MQ=255)
                        cttcaccattgaatggaaaggggaaggcccgacatgtcgggccTTCCCCTTGCCATTGAATGGTGAAg                                             >  1:6189543‑M2/44‑68 (MQ=255)
                         aTTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAgg                                            >  1:4685630/1‑68 (MQ=255)
                         aTTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTCGCCATTCAATGGTGAAgg                                            >  1:54314678/1‑68 (MQ=255)
                         aTTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCGTGCCATTCAATGGTGAAgg                                            >  1:23159502/1‑68 (MQ=255)
                          ttGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATTGTGAAGGt                                           <  1:25472444/68‑1 (MQ=255)
                          ttGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGt                                           <  1:26027754/68‑1 (MQ=255)
                           tGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGtt                                          >  1:30695905/1‑68 (MQ=255)
                            accattgaatggcaaggggaaggcccgccatgtcgggccTTCCCCTTGCCATTCAATGGTGaagggt                                          >  1:34282871‑M2/40‑65 (MQ=255)
                               attgaatggcaaggggaaggcccgacatgtcgggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCAt                                      >  1:39372248‑M2/37‑68 (MQ=255)
                                  gaatggcaaggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGc                                   >  1:13632441‑M1/16‑68 (MQ=255)
                                  ccACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGc                                   <  1:20786052/68‑1 (MQ=255)
                                  ccACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGc                                   <  1:24721029/68‑1 (MQ=255)
                                  ccACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCATTGCCATTCAATGGTGAAGGTTTCATTGc                                   <  1:4523611/68‑1 (MQ=255)
                                       ccGTGCCTTCGGCCCGACATGTCGGGCCTTACCCATGGCATTCAATGGGGATGGGTTCATTGACTAAc                              >  1:35987968/2‑68 (MQ=255)
                                       aCGTGCCTTCGGCCCGCCATGTCGGGCCTTCCCCTTGCCATTCAATGGTGCAGGTTTGATTGCGTTAc                              >  1:57992218/1‑68 (MQ=255)
                                       aCGTGCCTTCGGCCCGCCATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc                              >  1:45848314/1‑68 (MQ=255)
                                       aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc                              >  1:51726157/1‑68 (MQ=255)
                                       aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc                              >  1:21623249/1‑68 (MQ=255)
                                       aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc                              >  1:41948743/1‑68 (MQ=255)
                                       aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTAATTGCGTAAc                              >  1:55336595/1‑68 (MQ=255)
                                       aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCGTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc                              >  1:740704/1‑68 (MQ=255)
                                        cGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc                              >  1:30307612/1‑67 (MQ=255)
                                         gTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACg                             >  1:17130821/1‑67 (MQ=255)
                                           gCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAAt                                                    <  1:11161760/42‑1 (MQ=255)
                                              ttCGGCCCGCCATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccagcc                       >  1:44074410/1‑68 (MQ=255)
                                               aaggcccgacatgtcgggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccagcca                      >  1:46244195‑M2/21‑68 (MQ=255)
                                                 ggcccgacatgtcgggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGa                    <  1:50776494‑M2/50‑1 (MQ=255)
                                                  GCCCGACATGTCGGGCCTTCCCCTTGCCATTCGATGGTGAAGGTTTCATGGCGTAACGCCAGCCAGaa                   <  1:56488074‑M1/68‑1 (MQ=255)
                                                   CCCGCCATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGaaa                  <  1:28087424‑M1/68‑1 (MQ=255)
                                                        catgtcgggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGt              >  1:24223074‑M2/12‑67 (MQ=255)
                                                         atgtcgggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGc            <  1:40582644‑M2/58‑1 (MQ=255)
                                                         ATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGc            >  1:14039109‑M1/1‑68 (MQ=255)
                                                             cgggccGCCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCg         <  1:10003844‑M2/61‑1 (MQ=255)
                                                             cgcgccTCCCCCTGGCCATTAAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCg         <  1:43705839‑M2/61‑1 (MQ=255)
                                                             CGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCg         >  1:11621689‑M1/1‑67 (MQ=255)
                                                             CGGGCCTCCCCCTTGCCATTCAATGGTGACGGTTTCATTGCGAAACGCCAGCCAGAAATGGTGCTCg         >  1:50261296‑M1/1‑67 (MQ=255)
                                                              gggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGt       <  1:45521049‑M2/63‑1 (MQ=255)
                                                              GGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCgg        >  1:38402926‑M1/1‑67 (MQ=255)
                                                                GCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTaa     <  1:26863065‑M1/68‑1 (MQ=255)
                                                                GCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTaa     <  1:15420010‑M1/68‑1 (MQ=255)
                                                                 ccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTaaa    >  1:32132192‑M2/3‑68 (MQ=255)
                                                                   |                                                                   
CGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGG  >  CP009273/1237984‑1238118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.