| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2911375 | NA (NA) | 8 (0.010) | 6/92 | NT | NA | intergenic (+203/+29) | barA/gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/(D)‑glucarate dehydratase 1 |
| ? | CP009273 | = 2911381 | NA (NA) | intergenic (+209/+23) | barA/gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/(D)‑glucarate dehydratase 1 | |||||
Only 100 of 1056 total aligned reads displayed.
AAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCA > CP009273/2911308‑2911442 | tgTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATa > 1:2003210/1‑68 (MQ=255) aCCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagcc < 1:57773856‑M2/68‑6 (MQ=255) aCCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagcc < 1:42123959‑M2/68‑6 (MQ=255) ccTGGTACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:32057708‑M2/68‑7 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:37179804‑M2/68‑7 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:39903783‑M2/68‑7 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:25336015‑M2/68‑7 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:56921973‑M2/68‑7 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:52003723‑M2/68‑7 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:33946014‑M2/68‑7 (MQ=255) cTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccgg > 1:49674976‑M2/1‑61 (MQ=255) tACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggtttt > 1:38353978/1‑68 (MQ=255) aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCATATAGAGCCggttttg > 1:49142243/1‑68 (MQ=255) aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttg > 1:31603643/1‑68 (MQ=255) aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttg > 1:43194087/1‑68 (MQ=255) aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttg > 1:43453263/1‑68 (MQ=255) aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttg > 1:46440250/1‑68 (MQ=255) aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttg > 1:47146726/1‑68 (MQ=255) aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttg > 1:16021603/1‑68 (MQ=255) aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttg > 1:55204532/1‑68 (MQ=255) aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttg > 1:13586422/1‑68 (MQ=255) aCATAGCACAACAGGCTAATTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGACggttttg > 1:53785766/1‑68 (MQ=255) cATAGCTCAACAGGCTATTTTTCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGGGCCggtttttg > 1:6784800/1‑66 (MQ=38) cATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGCGCCggttttgg > 1:55559127/1‑68 (MQ=255) cATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttgg > 1:4268955/1‑68 (MQ=255) cATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttgg > 1:35502173/1‑68 (MQ=255) cATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttgg > 1:8515156/1‑68 (MQ=255) cATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttgg > 1:25065524/1‑68 (MQ=255) aTAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggt > 1:10649147/1‑68 (MQ=255) aTAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggt > 1:24458393/1‑68 (MQ=255) aTAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggt > 1:41008487/1‑68 (MQ=255) aTAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggt > 1:43966685/1‑68 (MQ=255) aTAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggt > 1:8147754/1‑68 (MQ=255) aGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGCGCCgggtttggttt > 1:29678142/1‑68 (MQ=255) aGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:4176003/1‑68 (MQ=255) aGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:33442617/1‑68 (MQ=255) aGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:9212851/1‑68 (MQ=255) aGCACAAAAGGCTATTTTGCGTTTAGCATAAGTCTCAAACAGGAACCAGATAGATCCggtgatggtta > 1:18456402/1‑67 (MQ=255) gCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:14972169/1‑67 (MQ=255) acaacaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:10108337/1‑65 (MQ=255) acaacaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:12519549/1‑65 (MQ=255) acaacaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:26725327/1‑65 (MQ=255) acaacaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGCCTCCAGATAGACCCggttttggttt > 1:29013986/1‑65 (MQ=255) aacaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:37813906/1‑63 (MQ=255) acaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGTCTCCAGATAGAGCCggttttggttt > 1:25807908/1‑62 (MQ=255) acaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:44313139/1‑62 (MQ=255) acaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:54733554/1‑62 (MQ=255) acaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:16567352/1‑62 (MQ=255) acaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:22556102/1‑62 (MQ=255) acaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:39074833/1‑62 (MQ=255) acaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTc < 1:2404308/68‑1 (MQ=255) acaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTc < 1:17570038/68‑1 (MQ=255) aGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt > 1:6010838/1‑68 (MQ=255) aGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt > 1:13148706/1‑68 (MQ=255) cTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt < 1:34791970/65‑1 (MQ=255) cTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt < 1:36661212/65‑1 (MQ=255) cTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt < 1:30639878/65‑1 (MQ=255) cTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt < 1:50855844/65‑1 (MQ=255) cTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt < 1:11874858/65‑1 (MQ=255) cTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt < 1:21306684/65‑1 (MQ=255) cTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt < 1:20863196/65‑1 (MQ=255) ttttGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCa < 1:48576879/68‑1 (MQ=255) ttttGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCa < 1:31002482/68‑1 (MQ=255) tttGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCa > 1:11363219/1‑67 (MQ=255) ttGCGTTTAGCATCAGTCTCAAACCGGCTCtatctggagccggtttgagactgatgctaaacgcaaaa > 1:27017373‑M1/1‑30 (MQ=255) ttGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCAcc < 1:30200086/68‑1 (MQ=255) ttGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCAcc > 1:45609266/1‑68 (MQ=255) ttGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCAcc > 1:7278934/1‑68 (MQ=255) gcgttaagacagaaaaacaAAAACGGCTCCAGATTGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCa < 1:34514622‑M1/49‑1 (MQ=255) gCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCAt < 1:14026434/68‑1 (MQ=255) gCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCAt < 1:32653805/68‑1 (MQ=255) gTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATg < 1:48037972/67‑1 (MQ=255) gTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGc > 1:23178356/1‑68 (MQ=255) gTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGc > 1:35873322/1‑68 (MQ=255) gTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGc > 1:51456994/1‑68 (MQ=255) aTCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACggg < 1:17138203/66‑1 (MQ=255) aTCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGgc > 1:23797784/1‑67 (MQ=255) aTCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGgc > 1:47435246/1‑67 (MQ=255) aTCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGgc > 1:40406715/1‑67 (MQ=255) tCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGgc > 1:5016613/1‑66 (MQ=255) aGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCtt > 1:28552074/1‑68 (MQ=255) ctcAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGt < 1:44785087/67‑1 (MQ=255) ctcAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGt < 1:28148701/67‑1 (MQ=255) aCCGGCTCtatctggagccgggttgagactgatgctaaacgcaaaatagcctgttgtgctatgtatca > 1:56101763‑M1/1‑8 (MQ=255) ACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATcgg < 1:54216712‑M1/68‑2 (MQ=255) ACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATcgc < 1:56519254‑M1/68‑2 (MQ=255) ACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGa < 1:2217127‑M1/68‑1 (MQ=255) ACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGa < 1:3129986‑M1/68‑1 (MQ=255) ACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGa < 1:14354484‑M1/68‑1 (MQ=255) ccGGCTCcatctggagccggtttgagaatgatgctaaacgcaaaatagcctgttgtgctatgtatcag > 1:27493798‑M1/1‑7 (MQ=255) CCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGa < 1:19022783‑M1/67‑1 (MQ=255) cgtctctatctggagccggtttgagactgatgctaaacgcaaaatagcctgttgtgctatgtatcagg < 1:21707422‑M1/65‑63 (MQ=255) cGGCTCtatctggagccggtttgagactgatgctaaccgcaaaatagcctgttgtgctatgtatcagg < 1:26099629‑M1/68‑63 (MQ=255) cGGCTCtatctggagccggtttgagactgatgctaaacgcaaaatagcctgttgtgctatgtatcagg < 1:53197537‑M1/68‑63 (MQ=255) cGGCTCtatctggagccggtttgagactgatgctaaacgcaaaatagcctgttgtgctatgtatcagg > 1:52611317‑M1/1‑6 (MQ=255) cGGCTCtatctggagccggtttgagactgatgctaaacgcaaaatagcctgttgtgctatgtatcagg < 1:19687857‑M1/68‑63 (MQ=255) cGGCTCtatctggagccggtttgagactgatgctaaacgcaaaatagcctgttgtgctatgtatcagg < 1:7717714‑M1/68‑63 (MQ=255) ggCTCtatctggagccggtttgagactgatgctaaacgcaaaatagcctgttgtgctatgtatcaggt < 1:1542845‑M1/68‑64 (MQ=255) ggCTCtatctggagccggtttgagactgatgctaaacgcaaaatagcctgttgtgctatgtatcaggt < 1:20515671‑M1/68‑64 (MQ=255) ctatctggagccggtttgagactgatgctaaacgcaaaatagcctgttgtgctatgtatcaggtctac < 1:32333092‑M1/68‑68 (MQ=255) | AAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCA > CP009273/2911308‑2911442 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |