| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2911375 | NA (NA) | 8 (0.010) | 6/92 | NT | NA | intergenic (+203/+29) | barA/gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/(D)‑glucarate dehydratase 1 |
| ? | CP009273 | = 2911381 | NA (NA) | intergenic (+209/+23) | barA/gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/(D)‑glucarate dehydratase 1 | |||||
Only 100 of 963 total aligned reads displayed.
TGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGG > CP009273/2911314‑2911448 | gTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAg < 1:32333092‑M2/68‑2 (MQ=255) aGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAga < 1:3120328‑M2/67‑3 (MQ=255) aCCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagcc < 1:30871294‑M2/68‑6 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:33946014‑M2/68‑7 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:19687857‑M2/68‑7 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:22235674‑M2/68‑7 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:18514533‑M2/68‑7 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:43768554‑M2/68‑7 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:17211171‑M2/68‑7 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:14164894‑M2/68‑7 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:7356991‑M2/68‑7 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:32000717‑M2/68‑7 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccg < 1:8486805‑M2/68‑7 (MQ=255) ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagacg < 1:21707422‑M2/68‑7 (MQ=255) tACATGGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggtttt > 1:56199888/1‑68 (MQ=255) tACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGCGCCggtttt > 1:25414693/1‑68 (MQ=255) tACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggtttt > 1:29515377/1‑68 (MQ=255) aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttg > 1:44955663/1‑68 (MQ=255) aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttg > 1:4129777/1‑68 (MQ=255) aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttg > 1:43194087/1‑68 (MQ=255) aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttg > 1:20988701/1‑68 (MQ=255) aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttg > 1:11997212/1‑68 (MQ=255) aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttg > 1:18005730/1‑68 (MQ=255) cATATCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttgg > 1:11166992/1‑68 (MQ=255) cATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttgg > 1:19991985/1‑68 (MQ=255) cATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttgg > 1:55840960/1‑68 (MQ=255) cATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttgg > 1:34863122/1‑68 (MQ=255) cATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttgg > 1:39276944/1‑68 (MQ=255) cATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttgg > 1:25065524/1‑68 (MQ=255) cATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttgg > 1:27956849/1‑68 (MQ=255) cATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttgg > 1:26975930/1‑68 (MQ=255) cATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttgg > 1:35502173/1‑68 (MQ=255) cATAGCACAACAGGATAATTTGGGTTTAGCATAAGAATCAAACCGGCTCCAGATAGCGCCggatttag > 1:54346117/1‑66 (MQ=255) aTAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggt > 1:46268607/1‑68 (MQ=255) gCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:38320167/1‑67 (MQ=255) gCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:27439797/1‑67 (MQ=255) gCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:52559994/1‑67 (MQ=255) gCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:1623591/1‑67 (MQ=255) gCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:47367913/1‑67 (MQ=255) acaacaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAgagccggtttgagactga > 1:5015614‑M2/1‑49 (MQ=255) acaacaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:9114533/1‑65 (MQ=255) acaacaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:6887726/1‑65 (MQ=255) acaacaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:44087133/1‑65 (MQ=255) acaacaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:10539828/1‑65 (MQ=255) acaacaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:10108337/1‑65 (MQ=255) acaacaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:1331902/1‑65 (MQ=255) acaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:16967145/1‑62 (MQ=255) acaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:53191682/1‑62 (MQ=255) acaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCggttttggttt > 1:36654916/1‑62 (MQ=255) acaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTc < 1:2130900/68‑1 (MQ=255) acaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTc < 1:33450137/68‑1 (MQ=255) acaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTc < 1:2404308/68‑1 (MQ=255) acaGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTc < 1:36130072/68‑1 (MQ=255) aGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt > 1:39037883/1‑68 (MQ=255) aGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt > 1:48976550/1‑68 (MQ=255) aGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt > 1:28567809/1‑68 (MQ=255) aGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt > 1:26405139/1‑68 (MQ=255) cTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt < 1:46974087/65‑1 (MQ=255) cTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt < 1:50855844/65‑1 (MQ=255) cTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt < 1:42147757/65‑1 (MQ=255) tATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACg < 1:40659942/68‑1 (MQ=255) aTTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTGTCAACg > 1:56637163/1‑67 (MQ=255) aTTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGc < 1:37672425/68‑1 (MQ=255) ttttGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCa < 1:25910254/68‑1 (MQ=255) ttGGGTTTAGCATCAGTCTCATACCTGCTCGTGATAGTGCCGGTTTTGTTTTTCTGTCTTAACGCAcg < 1:8031184/68‑2 (MQ=255) ttGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCAcc < 1:30200086/68‑1 (MQ=255) ttGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCAcc > 1:45609266/1‑68 (MQ=255) gcgttaagacagaaaaacaAAAACGGCTCCAGATTGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCa < 1:34514622‑M1/49‑1 (MQ=255) gCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCAt < 1:53823915/68‑1 (MQ=255) gCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCAt < 1:30538404/68‑1 (MQ=255) gCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCAt < 1:15622685/68‑1 (MQ=255) gCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCAt < 1:57940195/68‑1 (MQ=255) gCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCAt < 1:32653805/68‑1 (MQ=255) gTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATg > 1:22695617/1‑67 (MQ=255) gTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGc > 1:31582047/1‑68 (MQ=255) gTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGc > 1:12614911/1‑68 (MQ=255) gTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGc < 1:49661864/68‑1 (MQ=255) gTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGc > 1:23178356/1‑68 (MQ=255) gTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGc > 1:6203222/1‑68 (MQ=255) gTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGc > 1:51456994/1‑68 (MQ=255) gTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGc > 1:40292088/1‑68 (MQ=255) gTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTATTAACGCCCCATGc > 1:51990825/1‑68 (MQ=255) ttAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCa < 1:41795594/67‑1 (MQ=255) aGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACgg < 1:28974379/68‑1 (MQ=255) gCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCCCCATGCACgg > 1:44427335/1‑67 (MQ=255) aTCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGgc > 1:23797784/1‑67 (MQ=255) tCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGgc > 1:15111556/1‑66 (MQ=255) tCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGgc > 1:54951083/1‑66 (MQ=255) tctcAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGt > 1:55349150/1‑68 (MQ=255) ACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGa < 1:13729423‑M1/68‑1 (MQ=255) ACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGa < 1:37261839‑M1/68‑1 (MQ=255) ACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGa < 1:48483826‑M1/68‑1 (MQ=255) ACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGa < 1:20549185‑M1/68‑1 (MQ=255) GGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACg > 1:14543308‑M1/1‑68 (MQ=255) GCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACg < 1:57044929‑M1/67‑1 (MQ=255) CTCCAGATAGAGCCGGTTTTGGTTTCCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGt > 1:24559164‑M1/1‑67 (MQ=255) cAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTccag < 1:48004831/68‑1 (MQ=255) aTAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTccagcca > 1:19134162/1‑68 (MQ=255) tAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTccagc < 1:42875357/65‑1 (MQ=255) tAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTccagc < 1:11645434/65‑1 (MQ=255) | TGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGG > CP009273/2911314‑2911448 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |