| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3320552 = | 748 (1.070) | 40 (0.070) | 9/94 | NT | 5.6% | coding (472/630 nt) | rlmE | 23S rRNA U2552 2'‑O‑ribose methyltransferase, SAM‑dependent |
| ? | CP009273 | 3320589 = | 725 (1.230) | coding (435/630 nt) | rlmE | 23S rRNA U2552 2'‑O‑ribose methyltransferase, SAM‑dependent | |||||
Only 100 of 1250 total aligned reads displayed.
AGCGAATTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCC > CP009273/3320486‑3320619 | tatggcaccaaacatgagcggaacaccggcggtggatatcccccgtgccatgtatctggtggaaCTgg > 1:31816438‑M1/65‑68 (MQ=255) tatggcaccaaacatgagcggaacaccggcggtggatatcccccgtgccatgtatctggtggaaCTgg > 1:56912616‑M1/65‑68 (MQ=255) tatggcaccaaacatgagcggaacaccggcggtggatatcccccgtgccatgtatatggtggaaCTgg > 1:37097558‑M1/65‑68 (MQ=255) atggcaccaaagatgagcggaacaccggcggtggatatcccccgtgccatgtatctggtggaaCTGgc < 1:24667721‑M1/5‑1 (MQ=255) atggcaccaaacatgagcggaacaccggcggtggatgtcccccgtgccatgtatctggtggaaCTGgc < 1:54362782‑M1/5‑1 (MQ=255) atggcaccaaacatgagcggaacaccggcggtggatatcccccgtgccatgtatctggtggaaCTGgc < 1:10143480‑M1/5‑1 (MQ=255) atggcaccaaacatgagcggaacaccggcggtggatatcccccgtgccatgtatctggtggaaCTGgc < 1:23700144‑M1/5‑1 (MQ=255) atggcaccaaacatgagcggaacaccggcggtggatatcccccgtgccatgtatctggtggaaCTGgc > 1:44833295‑M1/64‑68 (MQ=255) atggcaccaaacatgagcggaacaccggcggtggatatcccccgtgccatgtatctggtggaaCTGgc < 1:56333866‑M1/5‑1 (MQ=255) atggcaccaaacatgagcggaacaccggcggtggatatcccccgtgccatgtagctggtggaaCTGgc < 1:47425260‑M1/5‑1 (MQ=255) tggcaccaaacatgagcggaacaccggcggtggatatcccccgtgccatgtatctggtggaaCTGgcg > 1:6969828‑M1/63‑68 (MQ=255) aaTTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGC > 1:32114516‑M1/1‑67 (MQ=255) aTTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCG < 1:5513645‑M1/67‑1 (MQ=255) aTTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCG < 1:14963153‑M1/67‑1 (MQ=255) aTTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCG < 1:52251882‑M1/67‑1 (MQ=255) aTTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCG < 1:51572868‑M1/67‑1 (MQ=255) aTTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCG < 1:19241977‑M1/67‑1 (MQ=255) aTTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCG < 1:34212123‑M1/67‑1 (MQ=255) tttCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCT < 1:14604369‑M1/68‑1 (MQ=255) tttCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCT < 1:2516093‑M1/68‑1 (MQ=255) tttCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCT < 1:38049291‑M1/68‑1 (MQ=255) tttCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCT < 1:40212553‑M1/68‑1 (MQ=255) ttCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTA > 1:17901960‑M1/1‑68 (MQ=255) caccaaacatgagcggaacaccggcggtggatatcccccgtgccatgtatctggtggaaCTGGCGCt > 1:3580832‑M1/60‑67 (MQ=255) tCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTaa < 1:57380980/68‑1 (MQ=255) accaaacatgagcggaacaccggcggtggatatcccccgtgccatgtatctggtggaaCTGGCgcttg < 1:12356758‑M1/10‑3 (MQ=255) ttAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACa < 1:9417264/68‑1 (MQ=255) aTACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCAc > 1:32462698/1‑68 (MQ=255) aTACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCAc > 1:49754334/1‑68 (MQ=255) aTACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCAc > 1:53384034/1‑68 (MQ=255) aTACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCAc > 1:29807143/1‑68 (MQ=255) ttcTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACg > 1:2669572/3‑68 (MQ=255) tACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACg > 1:2000432/1‑68 (MQ=255) aCTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACg > 1:43110309/1‑67 (MQ=255) aCTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACg > 1:1183113/1‑67 (MQ=255) aCTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACg > 1:27179885/1‑67 (MQ=255) aCTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACg > 1:27739272/1‑67 (MQ=255) aCTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACg > 1:28401427/1‑67 (MQ=255) tCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGac > 1:45834057/1‑67 (MQ=255) aTCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGAcaca < 1:14001351/68‑1 (MQ=255) aTCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGAcaca < 1:46799970/68‑1 (MQ=255) aTCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGAcaca < 1:12978768/68‑1 (MQ=255) gAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACAttt < 1:57875589/68‑1 (MQ=255) aCCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATa > 1:18460613/1‑50 (MQ=255) aCCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCta < 1:20502069‑M2/68‑3 (MQ=255) ccTTCGCCCTGGAACACGTTCACTACAAAACTGCCACCTGGCGCTAATACCGCACGACACTTTTCta < 1:22362615‑M2/67‑3 (MQ=255) ccTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCta < 1:51143116‑M2/67‑3 (MQ=255) ttCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCtagcg > 1:21090907‑M2/1‑63 (MQ=255) ccTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCtagcgccag > 1:23211856‑M2/1‑58 (MQ=255) cTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGtt < 1:8466989/68‑1 (MQ=255) ggAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTcc < 1:4113575/68‑1 (MQ=255) aaCACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTcca < 1:10352335/67‑1 (MQ=255) aaCACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTcca > 1:39792957/1‑67 (MQ=255) acacCTTCACTACAAAACTGCCACCTGGCTCTAATACATCACGACACATTTCTAGCGCCAGTTccacc > 1:21984780/1‑68 (MQ=255) acacCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTccacc > 1:44260291/1‑68 (MQ=255) acacCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTccacc > 1:37688901/1‑68 (MQ=255) acacCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTccac < 1:19639618/67‑1 (MQ=255) acacCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTccac < 1:35478434/67‑1 (MQ=255) ccTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGa < 1:40579130/68‑1 (MQ=255) ccTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGa < 1:52837745/68‑1 (MQ=255) ccTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGa < 1:38545001/68‑1 (MQ=255) cTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGAt < 1:7770353/68‑1 (MQ=255) cTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGAt < 1:4930145/68‑1 (MQ=255) cTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGAt < 1:34753750/68‑1 (MQ=255) cTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGAt > 1:29384706/1‑68 (MQ=255) cTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGAt < 1:10859572/68‑1 (MQ=255) cTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGAt < 1:25861584/68‑1 (MQ=255) cTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGAt < 1:46350819/68‑1 (MQ=255) tCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATAc < 1:43607226/68‑1 (MQ=255) tACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATg > 1:18754269/1‑67 (MQ=255) tACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATg > 1:39308708/1‑67 (MQ=255) tACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATg > 1:6329089/1‑67 (MQ=255) tACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATg > 1:17511134/1‑67 (MQ=255) tACAAAACTGCCACCTGGCGCGAgaaatgtgtcgtgatgtattagcgccaggtggcagttttgtagtg > 1:41593376‑M1/1‑23 (MQ=255) gtatctggtggaaCTGGCGCTTATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGc < 1:50690466‑M1/55‑1 (MQ=255) aCAAAAGTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGc < 1:7323141/68‑1 (MQ=255) aCAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGc < 1:21468986/68‑1 (MQ=255) aCAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGc < 1:48318370/68‑1 (MQ=255) aCAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGc < 1:47933685/68‑1 (MQ=255) cAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCtagcgccaggtggcagttttgtagtgaa > 1:24226543‑M2/1‑40 (MQ=255) aaaCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACg > 1:28833751/1‑68 (MQ=255) aaCTGCCACCTGGCGCTAATACATCACGACACATTTCtagcgccaggtggcagttttgtagtgaaggt > 1:15443637‑M2/1‑37 (MQ=255) aCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACggg < 1:17005739/68‑1 (MQ=255) aCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACggg > 1:22840289/1‑68 (MQ=255) aCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACggg > 1:36453149/1‑68 (MQ=255) aCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACggg < 1:538205/68‑1 (MQ=255) cTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACgggg < 1:13442280/68‑1 (MQ=255) cTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACgggg < 1:55786879/68‑1 (MQ=255) cTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACgggg < 1:25747140/68‑1 (MQ=255) cTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACgggg < 1:42179309/68‑1 (MQ=255) cTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACgggg < 1:16225820/68‑1 (MQ=255) cTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACgggg < 1:819173/68‑1 (MQ=255) gtggaaCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACggggg < 1:49931888‑M1/62‑1 (MQ=255) gtggaaCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACggggg < 1:33369253‑M1/62‑1 (MQ=255) gtggaaCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACggggg < 1:30563102‑M1/62‑1 (MQ=255) gCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGa < 1:45213658/68‑1 (MQ=255) ggaaCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGat < 1:11208623‑M1/64‑1 (MQ=255) ccTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATc < 1:8885692/68‑1 (MQ=255) ccTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATc < 1:48920073/68‑1 (MQ=255) CTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGCTACATGGCACGGGGGATATcc < 1:32880420‑M1/68‑1 (MQ=255) | AGCGAATTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCC > CP009273/3320486‑3320619 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |