| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3320552 = | 748 (1.070) | 40 (0.070) | 9/94 | NT | 5.6% | coding (472/630 nt) | rlmE | 23S rRNA U2552 2'‑O‑ribose methyltransferase, SAM‑dependent |
| ? | CP009273 | 3320589 = | 725 (1.230) | coding (435/630 nt) | rlmE | 23S rRNA U2552 2'‑O‑ribose methyltransferase, SAM‑dependent | |||||
Only 100 of 1130 total aligned reads displayed.
CCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGG > CP009273/3320522‑3320656 | ccTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGt > 1:52113627/1‑68 (MQ=255)ccTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGt < 1:21044098/68‑1 (MQ=255)ccTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGt > 1:15791125/1‑68 (MQ=255) tGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTc < 1:2788600/68‑1 (MQ=255) ggAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTcc < 1:21763804/68‑1 (MQ=255) cccccgtgccatgtatctggtggaactggcgctagaaatgtgtcgtgatgtattagcgccagTTccac < 1:30563102‑M2/6‑1 (MQ=255) cccccgtgccatgtatctggtggaactggcgctagaaatgtgtcgtgatgtattagcgccagTTccac < 1:44486458‑M2/6‑1 (MQ=255) cccccgtgccatgtatctggtggaactggcgctagaaatgtgtcgtgatgtattagcgccagTTccac < 1:35485156‑M2/6‑1 (MQ=255) aaCACCTTCACTACAAAACTGCCACCTGGCGCTAATTCATCACGACACATTTCTAGCGCCAGTTccac < 1:42249739/68‑1 (MQ=255) acacCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTccacc > 1:40519067/1‑68 (MQ=255) acacCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTccacc > 1:543829/1‑68 (MQ=255) acacCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTccac < 1:22898332/67‑1 (MQ=255) acacCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTccac > 1:43352286/1‑67 (MQ=255) acacCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTccac < 1:53718658/67‑1 (MQ=255) acacCTTCACTACAAAACTCCCACCTGGCGCTAATACATCACGAGACATTTCTAGCGCCAGTTccccc > 1:8732458/1‑68 (MQ=255) cgtgccatgtatctgggggaactggcgctagaaatgtgtcgtgatgtattagcgccagTTCCACCAGa < 1:16094667‑M2/10‑1 (MQ=255) gtgccatgtatctggtggaactggcgctagaaatgtgtcgtgatgtattagcgccagTTCCACCAGAt < 1:22193914‑M2/11‑1 (MQ=255) cTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGAt < 1:14613738/68‑1 (MQ=255) cTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGAt < 1:10859572/68‑1 (MQ=255) cTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGAt < 1:25861584/68‑1 (MQ=255) cTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGAt > 1:53461718/1‑68 (MQ=255) ttCACTACAAATCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGa < 1:3295725/66‑1 (MQ=255) tCACTACAAAACTGCCACCTGGCGCTAATACATCACGCCACATTTCTAGCGCCAGTTCCACCAGATAc < 1:56366470/68‑1 (MQ=255) tCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATAc < 1:18863602/68‑1 (MQ=255) tCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATAc < 1:5584187/68‑1 (MQ=255) tCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATAc < 1:5527339/68‑1 (MQ=255) tCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATAc < 1:34493830/68‑1 (MQ=255) aCTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACAt > 1:44909265/1‑68 (MQ=255) cTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATg < 1:19691540/68‑1 (MQ=255) cTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATg < 1:28432991/68‑1 (MQ=255) tACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATg > 1:17511134/1‑67 (MQ=255) aCAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGc < 1:20497877/68‑1 (MQ=255) aCAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGc < 1:13400681/68‑1 (MQ=255) aaCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACgg < 1:24502945/68‑1 (MQ=255) aCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCATATACATGGCACggg < 1:23452294/68‑1 (MQ=255) aCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACggg < 1:5153025/68‑1 (MQ=255) aCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACggg < 1:31939716/68‑1 (MQ=255) aCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACggg < 1:17005739/68‑1 (MQ=255) aCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACggg < 1:51114409/68‑1 (MQ=255) aCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACggg < 1:18420153/68‑1 (MQ=255) aCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACggg > 1:57463860/1‑68 (MQ=255) cTGCCTCCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACgggg < 1:10346951/68‑1 (MQ=255) cTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACgggg < 1:33990339/68‑1 (MQ=255) cTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACgggg < 1:50285871/68‑1 (MQ=255) cTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACgggg < 1:15178350/68‑1 (MQ=255) cTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACgggg < 1:37443086/68‑1 (MQ=255) cTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACgggg < 1:7212397/68‑1 (MQ=255) cTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACgggg < 1:39394079/68‑1 (MQ=255) tGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACggggg > 1:2943272/1‑68 (MQ=255) gtggaaCTGGCGCTAATACATCTCGCCACATTTCTAGCGCCAGTTCCACCAGCTACATGGCACggggg < 1:6963392‑M1/62‑1 (MQ=255) gtggaaCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACggggg < 1:12969455‑M1/62‑1 (MQ=255) gCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGa < 1:46110396/68‑1 (MQ=255) cACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGatt > 1:47717126/1‑67 (MQ=255) cACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGata > 1:27033940/1‑68 (MQ=255) CGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCAcc < 1:46671195‑M1/67‑1 (MQ=255) CGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCAcc < 1:45754477‑M1/67‑1 (MQ=255) TAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCAccgcc > 1:48283704‑M1/1‑67 (MQ=255) TAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCAccgcc > 1:3481461‑M1/1‑67 (MQ=255) TAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCAccgcc > 1:36512218‑M1/1‑67 (MQ=255) TAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCAccgcc > 1:3589154‑M1/1‑67 (MQ=255) aTACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGgt < 1:32424906/68‑1 (MQ=255) aTACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGgt > 1:16511006/1‑68 (MQ=255) tACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGgtg > 1:8300171/1‑68 (MQ=255) tACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGgtg > 1:24004785/1‑68 (MQ=255) tACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGgtg > 1:14232936/1‑68 (MQ=255) tACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGgtg > 1:42947200/1‑68 (MQ=255) aCATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGgtgt > 1:28939788/1‑68 (MQ=255) aCATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGgtgt < 1:10114448/68‑1 (MQ=255) aCATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGgtgt < 1:40700171/68‑1 (MQ=255) aTCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGtt > 1:17870767/1‑67 (MQ=255) aTCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGtt > 1:9232941/1‑67 (MQ=255) aTCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGtt > 1:38849233/1‑67 (MQ=255) aTCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACAGCCGGTGtt > 1:4378631/1‑67 (MQ=255) aTCACGACACATTTCTAGCGCCAGTTCCAACAGATACAAGGCACGGGGGATATCCACCGCCgttgtt > 1:47088992/1‑67 (MQ=255) tCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTcc < 1:26580231/68‑1 (MQ=255) cACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTcc > 1:12133837/1‑67 (MQ=255) cACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTcc > 1:528134/1‑67 (MQ=255) aCGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGc < 1:50753579/68‑1 (MQ=255) acacATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCa > 1:48825559/1‑68 (MQ=255) cacaTTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCAt < 1:11378375/68‑1 (MQ=255) acaTTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCTTg > 1:3775013/1‑68 (MQ=255) acaTTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATg > 1:24707961/1‑68 (MQ=255) caTTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGt < 1:19318817/68‑1 (MQ=255) caTTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGt < 1:12675175/68‑1 (MQ=255) caTTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGt < 1:33372578/68‑1 (MQ=255) cTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGt < 1:30069151/68‑1 (MQ=255) cTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGt < 1:13670615/68‑1 (MQ=255) cTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGt < 1:31598933/68‑1 (MQ=255) tagcgccagTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTg < 1:21354920‑M2/59‑1 (MQ=255) agcgccagTTCCACCAGATACATGGCACGGCGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTg > 1:38364062‑M2/9‑67 (MQ=255) gccagTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCat < 1:22662681‑M2/63‑1 (MQ=255) gccagTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCat < 1:25314244‑M2/63‑1 (MQ=255) gccagTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCat < 1:41637859‑M2/63‑1 (MQ=255) gccagTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCat < 1:41217404‑M2/63‑1 (MQ=255) gccagTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCat < 1:49840012‑M2/63‑1 (MQ=255) gccagTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCat < 1:7530750‑M2/63‑1 (MQ=255) ccagTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCata > 1:56912616‑M2/5‑68 (MQ=255) ccagTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCata > 1:6072259‑M2/5‑68 (MQ=255) cagTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCatat < 1:4930259‑M2/65‑1 (MQ=255) ttCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTATGGTGCCATATCgg > 1:40017713/1‑68 (MQ=255) | CCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGG > CP009273/3320522‑3320656 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |