| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3618995 | NA (NA) | 10 (0.020) | 7/92 | NT | NA | noncoding (47/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3619028 | NA (NA) | noncoding (80/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 1066 total aligned reads displayed.
GGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTT > CP009273/3618930‑3619062 | ggTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAcc > 1:933431‑M1/1‑66 (MQ=255) ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga > 1:8570432‑M1/1‑64 (MQ=255) ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga > 1:39244959‑M1/1‑64 (MQ=255) ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga > 1:53935895‑M1/1‑64 (MQ=255) ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga > 1:17014821‑M1/1‑64 (MQ=255) ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAcc < 1:57782183‑M1/66‑3 (MQ=255) ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAcaga > 1:42534337‑M1/1‑64 (MQ=255) ttttGGGGGCCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga > 1:26871146‑M1/1‑64 (MQ=255) tttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga < 1:6472119‑M1/67‑5 (MQ=255) tttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga < 1:405105‑M1/67‑5 (MQ=255) tttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga < 1:44401302‑M1/67‑5 (MQ=255) tgtgggtcaGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgatgc < 1:296562‑M1/65‑8 (MQ=255) ggggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgatgcgt > 1:489973‑M1/1‑59 (MQ=255) ggggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgatgcgt > 1:38249512‑M1/1‑59 (MQ=255) gggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgatgcgta > 1:3571033‑M1/1‑58 (MQ=255) tCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt < 1:13293400/67‑1 (MQ=255) tCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt < 1:11809999/67‑1 (MQ=255) tCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt < 1:15205816/67‑1 (MQ=255) tCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt < 1:4732052/67‑1 (MQ=255) tCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt < 1:34260774/67‑1 (MQ=255) tCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt < 1:4949701/67‑1 (MQ=255) tCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACAAAAATTCAATAAATTGCACCGATGCGTAGt > 1:29276435/1‑67 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAATAACAACTAATATTCAATAAATTGCACCGATGCGTAGTcc < 1:46778505/68‑1 (MQ=39) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:43763384/68‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:37694399/68‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:3683991/68‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:23229856/68‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTccc < 1:41178546/65‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTccc < 1:48041923/65‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCtat > 1:21283263/1‑68 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:10423291/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:44877985/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:14779661/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:1386269/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:55543909/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:55873818/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:28000519/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:56107805/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:56463916/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:6995188/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:28431683/66‑1 (MQ=255) tAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATaa > 1:30029242/1‑67 (MQ=255) tAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATaa > 1:15572920/1‑67 (MQ=255) tAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATaa > 1:56980229/1‑67 (MQ=255) tAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAg < 1:1656852/68‑1 (MQ=255) tAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAg < 1:3252709/68‑1 (MQ=255) tAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAg < 1:34596780/68‑1 (MQ=255) tAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAg < 1:1414013/68‑1 (MQ=255) aaaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGc < 1:26242816/68‑1 (MQ=255) aaCGGCTTATCCTGCGTAAAAACAACTAAAATTCAATAAATTGCAGGGTTGGGTAGTCCCTATAAGCt < 1:33652403/68‑1 (MQ=25) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt < 1:50764302/68‑1 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:11089693/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:51785330/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:12846223/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:43257595/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:775863/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:17767229/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:39836348/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:242986/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt < 1:2470716/68‑1 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:19443837/1‑68 (MQ=255) gCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTAC < 1:33066774‑M2/68‑1 (MQ=255) tCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCG < 1:24995530‑M2/68‑1 (MQ=255) tCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCG < 1:22527804‑M2/68‑1 (MQ=255) tCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCG < 1:27552233‑M2/68‑1 (MQ=255) tCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCG < 1:31431965‑M2/68‑1 (MQ=255) tCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCG < 1:33898132‑M2/68‑1 (MQ=255) ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG < 1:1595907‑M2/68‑1 (MQ=255) ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG < 1:45460397‑M2/68‑1 (MQ=255) ccTAAAAACAACTAAAATTCAATAAATTGCAccgatgcgtaagcttataggggctgcgcatcggtgca > 1:53042679‑M1/1‑31 (MQ=255) ccTAAAAACAACTAAAATTCAATAAATTGCAccgatgcgtaagcttatagggactacgcatcggggca > 1:54207801‑M1/1‑31 (MQ=255) ccTAAAAACAACAAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCa < 1:40074671/67‑1 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGtgcaa > 1:38739516‑M2/1‑63 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 1:36303628/68‑1 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 1:20355042/68‑1 (MQ=255) aaaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGt < 1:37241016/68‑1 (MQ=255) aaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTa < 1:52421027/68‑1 (MQ=255) aacaacTAAAATTCAATAAATTGCCCCGATGCGTAGGCCCTATAAGCTTACGCATCGGGCAATTGTAt < 1:1085852/68‑1 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt < 1:21695311/68‑1 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt < 1:51139214/68‑1 (MQ=255) acTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTAc > 1:20604345/1‑68 (MQ=255) aaaaTTCAATAAATTGCCCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGcc < 1:3950740/68‑1 (MQ=255) aaaaTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGcc < 1:50070440/68‑1 (MQ=255) aaaaTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGcc < 1:42835069/68‑1 (MQ=255) aaaTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCa < 1:12419736/68‑1 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 1:5342861/68‑1 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 1:20970882/68‑1 (MQ=255) cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc < 1:18887726/68‑1 (MQ=255) cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc < 1:40778510/68‑1 (MQ=255) aTAAATTGCACCGTTGCGTAGTCCCTATAAGCTTACGCATCGGtgcaatttattgaattttagttgtt > 1:55101213‑M2/1‑43 (MQ=255) tAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCa > 1:23725501/1‑68 (MQ=255) aTTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATc < 1:25566436/68‑1 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCtt < 1:10015404/68‑1 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCtt < 1:30742984/68‑1 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCtt < 1:18416638/68‑1 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:54603607/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:6154309/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:41765621/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:45986290/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:47766921/1‑67 (MQ=255) | GGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTT > CP009273/3618930‑3619062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |