| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3618995 | NA (NA) | 10 (0.020) | 7/92 | NT | NA | noncoding (47/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3619028 | NA (NA) | noncoding (80/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 1162 total aligned reads displayed.
CCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGC > CP009273/3618961‑3619095 | ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:8466658‑M2/1‑68 (MQ=255)ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:10960138‑M2/1‑68 (MQ=255)ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG < 1:1595907‑M2/68‑1 (MQ=255)ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:14429054‑M2/1‑68 (MQ=255) ccTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCa < 1:2874874/67‑1 (MQ=255) aaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTa < 1:12610892/68‑1 (MQ=255) aaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTa < 1:40532580/68‑1 (MQ=255) aaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTa < 1:41744632/68‑1 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGGATCGGGCAATTGTAt > 1:53709017/1‑68 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt < 1:51139214/68‑1 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt < 1:18579363/68‑1 (MQ=255) acaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAtt < 1:39264252/68‑1 (MQ=255) acTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTAc > 1:42657763/1‑68 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 1:24839845/68‑1 (MQ=255) cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc < 1:52618095/68‑1 (MQ=255) cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc < 1:33603229/68‑1 (MQ=255) aaaTTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCaa > 1:24101560/1‑68 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCGATTGTCCCAATCGTCt > 1:54817010/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCtt < 1:11338403/68‑1 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:19122887/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:47766921/1‑67 (MQ=255) tGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGa < 1:4622664/68‑1 (MQ=255) tGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGa > 1:19994949/1‑68 (MQ=255) gCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGaa < 1:43330970/68‑1 (MQ=255) gTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATc < 1:30884595/68‑1 (MQ=255) gTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATc > 1:31659353/1‑68 (MQ=255) gTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATc > 1:26685728/1‑68 (MQ=255) gTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATc > 1:25187266/1‑68 (MQ=255) gTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATc > 1:7109750/1‑68 (MQ=255) aGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgc > 1:36854398/1‑68 (MQ=255) tCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgca > 1:37858924/1‑67 (MQ=255) tCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgca > 1:29665361/1‑67 (MQ=255) tCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgca > 1:22178932/1‑67 (MQ=255) cccTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagc > 1:10474383/1‑68 (MQ=255) cccTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagc > 1:32560770/1‑68 (MQ=255) cccTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagc > 1:6052254/1‑68 (MQ=255) cccTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagc > 1:20385760/1‑68 (MQ=255) cccTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagc > 1:20938286/1‑68 (MQ=255) cccTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgca < 1:6761824/66‑1 (MQ=255) cccTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgca < 1:28203455/66‑1 (MQ=255) tataAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc < 1:38436939/68‑1 (MQ=255) taAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc > 1:54008752/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:52239779/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:45732379/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:40128141/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:21526676/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:50718232/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:23641774/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:54323954/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:56438262/1‑68 (MQ=255) gCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt > 1:35859039/1‑68 (MQ=255) gCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt > 1:46830817/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTCCGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:13112567/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGACTCGCAGCAGAGAAATg > 1:48965575/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:17031642/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:56013526/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:57078267/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:6289897/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:45237048/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:7711484/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:17759794/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:927545/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:25943929/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:34814225/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:38886815/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:27916359/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCACAATCGTCTGCCAGAATCGCAGCAGCGCAATg > 1:22821722/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGACATTGTCCCAATCGTCTACCTGAATCGCAGCAGCCCAATg > 1:37366982/1‑68 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt < 1:47174168/66‑1 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt < 1:16479985/66‑1 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt < 1:12236520/66‑1 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt < 1:14083708/66‑1 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg < 1:40872882/68‑1 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg < 1:4477942/68‑1 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg < 1:44174433/68‑1 (MQ=255) tACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt < 1:15070414/68‑1 (MQ=255) aCGCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccc > 1:55472083‑M2/1‑9 (MQ=255) gCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgaccccca < 1:15600097‑M2/68‑62 (MQ=255) gCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgaccccca < 1:55196920‑M2/68‑62 (MQ=255) gCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgaccccca < 1:34272683‑M2/68‑62 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:8905112/1‑68 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:48514395/1‑68 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:10000944/1‑68 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:42192186/1‑68 (MQ=255) cATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaa < 1:53157005‑M2/68‑63 (MQ=255) cATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaa > 1:32944639/1‑68 (MQ=255) cATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaa > 1:36226908/1‑68 (MQ=255) aTCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaaa > 1:57737812/1‑68 (MQ=255) aTCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaaa > 1:30322335/1‑68 (MQ=255) aTCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaaa > 1:41192487/1‑68 (MQ=255) aTCGGGCAATTGAATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaa < 1:35216245/67‑1 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:2732620‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:39756373‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaa < 1:13625131‑M2/67‑64 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaa < 1:24355788‑M2/67‑64 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaa < 1:51822712‑M2/67‑64 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaa < 1:50065311‑M2/67‑64 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaa < 1:21210420‑M2/67‑64 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaa < 1:4374421‑M2/67‑64 (MQ=255) ggtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaacc > 1:49367536‑M2/1‑2 (MQ=255) | CCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGC > CP009273/3618961‑3619095 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |