| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3392134 | 686 (1.110) | 35 (0.070) | 12/96 | NT | 5.6% | coding (101/489 nt) | mreD | cell wall structural complex MreBCD transmembrane component MreD |
| ? | CP009273 | = 3392148 | 590 (1.110) | coding (87/489 nt) | mreD | cell wall structural complex MreBCD transmembrane component MreD | |||||
Only 100 of 126 total aligned reads displayed.
CTGTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3392060‑3392134‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccggaTAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTTGCC < CP009273/3392148‑3392083 CTGTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTT > 1:3584284/1‑68 TGTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTG > 1:25079900/1‑68 TGTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTG > 1:26549436/1‑68 TGTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTG > 1:39751636/1‑68 TGTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTG > 1:14398613/1‑68 GTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGG < 1:22248118/68‑1 GTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGG < 1:24628202/68‑1 GTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGG < 1:30546252/68‑1 GTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGG < 1:35695137/68‑1 GCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCC < 1:15670442/68‑1 GCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCC < 1:46571987/68‑1 GCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCC < 1:34898694/68‑1 GCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCC > 1:12419421/1‑68 GCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGC < 1:301425/67‑1 GCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGC < 1:10140344/67‑1 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:37405546/1‑68 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:41205310/1‑68 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:31455149/1‑68 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:8411356/1‑68 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:26428658/1‑68 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:11485001/1‑68 CCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGG > 1:10064174/1‑68 CCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGG > 1:34611193/1‑68 CCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGG > 1:20477522/1‑68 CCACATTTACGCGATGAGGCAAGGACAGGATCCAATACAACAAGATGAGTAACACCCAGTTTTGCCGG > 1:37509945/1‑68 CACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGA < 1:13706299/68‑1 CACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGA < 1:18608980/68‑1 GCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGATACCCTGct > 1:6696834/1‑66 GCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGAT > 1:23035499/1‑68 AAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCG > 1:29811241/1‑67 CCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAA > 1:46446687/1‑68 CCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAA > 1:5475225/1‑68 ATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGGTAACCGGATTGTTTTCCGGCCGAACGGG > 1:134194/1‑68 ATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGG > 1:40439618/1‑68 ATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGG > 1:5166655/1‑68 ATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGG > 1:25277366/1‑68 ATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGG > 1:44571979/1‑68 CCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAAGCTGATTGTTTTCCGGCCAAACTGGGT > 1:30572153/1‑68 CCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGT > 1:26119263/1‑68 ATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:47446526/1‑68 ATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:13223664/1‑68 TACAACAAGATGAGTAACACCCAGTTTGGCCGGGTTGCGTGATTGTTTTCGGGCCACACTGGGTGTT > 1:15426612/1‑67 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAGCCTGATTGTTTTCCGGCCAACCTGGGTGTT > 1:42649235/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATACCCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:21814511/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTAg > 1:41876966/1‑67 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:34861904/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:40886657/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:39940850/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:28307536/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:29976921/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:28803633/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:788043/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTGTCCGGCCAAACGGGGTGTT > 1:40621678/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGAGTGTTTTCCGGCCAACCTGGGTGTT > 1:729903/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGAGTGTTTTCCGGCCAAACTGGGTGTT > 1:22193430/1‑66 AACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTC > 1:41475927/1‑68 ACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGTTTGTTTTCCGGCCAAACTGGGTGTTACgga > 1:8845258/1‑65 AGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCAACTTGATG > 1:23563381/1‑68 ACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGG > 1:47598366/1‑68 GTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGAT > 1:49090790/1‑65 GTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGAT > 1:36847114/1‑65 GTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGAT > 1:51215711/1‑65 gTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGG < 1:6682216/67‑1 TGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGC < 1:7485630/68‑1 TGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGC < 1:30420497/68‑1 TGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGC < 1:19944881/68‑1 GGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCC < 1:36871541/68‑1 GGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCC < 1:16629724/68‑1 GGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCC < 1:19926808/68‑1 GCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCT > 1:27111685/1‑68 GCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCT > 1:23368196/1‑68 GCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCT > 1:21721693/1‑68 GCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCT > 1:34863572/1‑68 GCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCT > 1:6111421/1‑68 GCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCT > 1:19576468/1‑68 GCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCGTGTTGTATTGGATCCTGGCCT > 1:47317359/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:6943962/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:7115741/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:38806094/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:46381870/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:27158608/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:29174793/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:29234465/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:29834281/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:3103464/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:31597379/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:32430249/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:18726326/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:15851060/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:36397005/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:40140655/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:41533251/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:42035644/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:44754460/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:46523975/1‑68 CGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:9215175/1‑67 GGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTTGC < 1:5666785/68‑1 GGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTTGC < 1:12838629/68‑1 GGATAACCTGATTGTTTTCCGGCCAAACTGGGTGGTACTCATCTTGTTGTATTGGATCCTGGCCTTGC < 1:1881474/68‑1 GGATAACCTGATTGTATTCCGGCCAAACTGGGGGTTACTCATCTTGTTGTATTGGATCCTGGCCTTGC < 1:39880481/68‑1 CTGTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3392060‑3392134‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccggaTAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTTGCC < CP009273/3392148‑3392083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |