| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3392134 | 686 (1.110) | 35 (0.070) | 12/96 | NT | 5.6% | coding (101/489 nt) | mreD | cell wall structural complex MreBCD transmembrane component MreD |
| ? | CP009273 | = 3392148 | 590 (1.110) | coding (87/489 nt) | mreD | cell wall structural complex MreBCD transmembrane component MreD | |||||
Only 100 of 950 total aligned reads displayed.
CACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAG > CP009273/3392067‑3392199 | acaTTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGaa < 1:10888583/68‑1 (MQ=255) acaTTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGaa < 1:8448015/68‑1 (MQ=255) caTTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGaaa < 1:13072979/68‑1 (MQ=255) tttACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAAc > 1:30677769/1‑68 (MQ=255) tttACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAAc < 1:14252989/68‑1 (MQ=255) ttACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACa < 1:2062093/68‑1 (MQ=255) ttACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACa < 1:19717149/68‑1 (MQ=255) ttACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCACTTTGGCCGGAAAACa < 1:47800246/68‑1 (MQ=255) gcgATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCa > 1:7752809/1‑68 (MQ=255) gcgATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCa < 1:27219054/68‑1 (MQ=255) gcgATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCa > 1:45953614/1‑68 (MQ=255) gcgATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCa > 1:13884802/1‑68 (MQ=255) gcgATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCa < 1:37075045/68‑1 (MQ=255) gATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAg < 1:37535127/67‑1 (MQ=255) tGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGt < 1:40683395/67‑1 (MQ=255) gAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTa < 1:7145864/68‑1 (MQ=255) gAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTa < 1:42129794/68‑1 (MQ=255) gAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTa < 1:6493062/68‑1 (MQ=255) gCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtcc < 1:5666785‑M2/68‑4 (MQ=255) aaGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtccgg > 1:1637412‑M2/1‑63 (MQ=255) aaGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtccgg > 1:46381870‑M2/1‑63 (MQ=255) aaGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtccgg > 1:18726326‑M2/1‑63 (MQ=255) aaGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtccgg > 1:3103464‑M2/1‑63 (MQ=255) aGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtccggc > 1:34863572‑M2/1‑62 (MQ=255) ccAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAtaacctgattgttttccggccaa > 1:5475225‑M1/1‑45 (MQ=255) ccAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAg > 1:32280926/1‑68 (MQ=255) ccAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAg > 1:35104141/1‑68 (MQ=255) cAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAgg < 1:24872743/68‑1 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAtaacctgattgttttccggccaaactgg > 1:44571979‑M1/1‑40 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtccggccaaac > 1:51215711‑M2/1‑54 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAggg < 1:49621376/65‑1 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt > 1:50155183/1‑68 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt > 1:29962648/1‑68 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt > 1:42498016/1‑68 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt > 1:8180439/1‑68 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt > 1:1669303/1‑68 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt > 1:46809740/1‑68 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt > 1:2177150/1‑68 (MQ=255) tCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATg > 1:36203244/1‑68 (MQ=255) ccAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGa < 1:1245510/68‑1 (MQ=255) ccAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGa > 1:31556712/1‑68 (MQ=255) aTACAACAAGATGAGTAACACCCAGTTTGGCCGGAtaacctgattgttttccggccaaactgggtgtt > 1:47446526‑M1/1‑35 (MQ=255) tACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTg < 1:8816814/68‑1 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAtaacctgattgttttccggccaaactgggtgttag > 1:41876966‑M1/1‑33 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:18115859/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:40363387/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:39950868/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:33380924/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:39523681/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAACCGGCCAGGGCATGATTTgc > 1:20196019/1‑68 (MQ=255) acaaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagc > 1:41271480/1‑68 (MQ=255) acaaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagc > 1:10042679/1‑68 (MQ=255) acaaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagc > 1:11994839/1‑68 (MQ=255) caaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagca < 1:25565469/68‑1 (MQ=255) caaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagca < 1:6829357/68‑1 (MQ=255) aaGATGAGTAACACCCAGTTTGGCCGGAAAACGATCAGGTTATCCGGCCAGGGCATGATTTgcagca > 1:17743359/1‑67 (MQ=255) aaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagca > 1:35691335/1‑67 (MQ=255) aaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagca > 1:48686207/1‑67 (MQ=255) aaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCACGGCATCATTTgcagca > 1:34437163/1‑67 (MQ=255) aGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAAc < 1:11483801/68‑1 (MQ=255) aTGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACa > 1:10310494/1‑67 (MQ=255) aTGAGTAACAACCAGTTTGGCCGTAAAACAATCAGGTTATCCGTCCAGGGCATGATTTGCAGCAACAg > 1:23574696/1‑68 (MQ=255) tGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAgc < 1:4699872/68‑1 (MQ=255) tGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAgc < 1:45109100/68‑1 (MQ=255) gAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtccggccaaactgggtgttactcatcttgtt > 1:41475927‑M2/1‑37 (MQ=255) gAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAgc > 1:24151579/1‑67 (MQ=255) aaCACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCa < 1:50909129/66‑1 (MQ=255) aaCACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAAt > 1:21231730/1‑68 (MQ=255) aaCACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAAt > 1:26879970/1‑68 (MQ=255) acacCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATg < 1:38591842/68‑1 (MQ=255) acacCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATg < 1:44897992/68‑1 (MQ=255) acacCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATg < 1:42820606/68‑1 (MQ=255) cacCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGa < 1:9262473/68‑1 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTAtccggccaaactgggtgttactcatcttgttgtattgg > 1:26119263‑M2/1‑30 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg > 1:44167429/1‑68 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg > 1:15356044/1‑68 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg > 1:15742588/1‑68 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg > 1:16096729/1‑68 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg < 1:19298796/68‑1 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg < 1:22820236/68‑1 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg > 1:49237778/1‑68 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg > 1:32820807/1‑68 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg < 1:27827550/68‑1 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg > 1:28428074/1‑68 (MQ=255) cccAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAgg > 1:48336404/1‑68 (MQ=255) ccAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCACCAGCGCAATGAGGa > 1:38216453/1‑68 (MQ=255) ccAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGa > 1:14587967/1‑68 (MQ=255) gTTTGGCCGGAtaacctgattgttttccggccaaactgggtgttactcatcttgttgtattggat > 1:36847114‑M1/1‑11 (MQ=255) tGGCCGGAtaacctgattgttttccggccaaactgggtgttactcatcttgttgtattggatcctggc < 1:30420497‑M1/68‑61 (MQ=255) tGGCCGGAtaacctgattgttttccggccaaactgggtgttactcatcttgttgtattggatcctggc < 1:7485630‑M1/68‑61 (MQ=255) tGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAagaga < 1:22123652/68‑1 (MQ=255) tGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAagaga < 1:17324997/68‑1 (MQ=255) tGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAagaga < 1:23176665/68‑1 (MQ=255) ccGGAtaacctgattgttttccggccaaactgggtgttactcatcttgttgtattggatcctggcctt > 1:3884293‑M1/1‑5 (MQ=255) ccGGAtaacctgattgttttccggccaaactgggtgttactcatcttgttgtattggatcctggcctt > 1:29174793‑M1/1‑5 (MQ=255) ccGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGcc > 1:43460626/1‑68 (MQ=255) cGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCa > 1:29645424/1‑68 (MQ=255) ggAtaacctgattgttttccggccaaactgggtgttactcatcttgttgtattggatcctggccttgc < 1:29377673‑M1/68‑66 (MQ=255) ggAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAg < 1:43188305/68‑1 (MQ=255) ggAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAg < 1:13516203/68‑1 (MQ=255) | CACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAG > CP009273/3392067‑3392199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |