| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3392134 | 686 (1.110) | 35 (0.070) | 12/96 | NT | 5.6% | coding (101/489 nt) | mreD | cell wall structural complex MreBCD transmembrane component MreD |
| ? | CP009273 | = 3392148 | 590 (1.110) | coding (87/489 nt) | mreD | cell wall structural complex MreBCD transmembrane component MreD | |||||
Only 100 of 799 total aligned reads displayed.
GAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCT > CP009273/3392081‑3392215 | gAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTa < 1:6493062/68‑1 (MQ=255)gAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTa < 1:48878889/68‑1 (MQ=255)gAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTa < 1:42109085/68‑1 (MQ=255) aaGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtccgg > 1:7115741‑M2/1‑63 (MQ=255) aaGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtccgg > 1:29834281‑M2/1‑63 (MQ=255) aaGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtccgg > 1:3884293‑M2/1‑63 (MQ=255) aaGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtccgg > 1:4584940‑M2/1‑63 (MQ=255) aaGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtccg > 1:9215175‑M2/1‑63 (MQ=255) aGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtccggc > 1:21721693‑M2/1‑62 (MQ=255) aGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtccggc > 1:19576468‑M2/1‑62 (MQ=255) ccAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAg > 1:41538525/1‑68 (MQ=255) ccAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAg > 1:39950485/1‑68 (MQ=255) ccAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAg > 1:4718944/1‑68 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAggg < 1:49621376/65‑1 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGc < 1:24091666/66‑1 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt > 1:42424699/1‑68 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt > 1:44963349/1‑68 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt > 1:1774182/1‑68 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt > 1:18020378/1‑68 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt > 1:46267602/1‑68 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt > 1:32278621/1‑68 (MQ=255) tCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATg > 1:1471004/1‑68 (MQ=255) tCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATAATGTTATCCGGCCAGGGCATg > 1:20085879/1‑68 (MQ=255) tCCAATACAACAAGATGAGTAACACCCAGTTTGGACGGAACACTTTCAGGATATCACGCCAGGGCAtt > 1:22624197/1‑67 (MQ=255) ccAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGa > 1:31556712/1‑68 (MQ=255) cAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGAt < 1:10252854/68‑1 (MQ=255) cAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGAt < 1:40291260/68‑1 (MQ=255) cAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGAt < 1:49249230/68‑1 (MQ=255) tACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGAttt > 1:13896490/1‑67 (MQ=255) tACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGAttt > 1:43556668/1‑67 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:37005780/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:37692681/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:25223198/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:6817993/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:5734411/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:51158289/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:28685903/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:13055445/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:29550523/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:16355474/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:33380924/1‑68 (MQ=255) caacaaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgca < 1:8380220/68‑1 (MQ=255) aacaaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgca > 1:27224804/1‑67 (MQ=255) acaaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagc > 1:14321958/1‑68 (MQ=255) acaaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagc > 1:10042679/1‑68 (MQ=255) aaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagca > 1:42907054/1‑67 (MQ=255) aaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagca > 1:39465598/1‑67 (MQ=255) aaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCACGGCATCATTTgcagca > 1:34437163/1‑67 (MQ=255) aGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAAc < 1:31067602/68‑1 (MQ=255) aTGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACa > 1:41354320/1‑67 (MQ=255) tGAGTACCACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAg < 1:4328285/67‑1 (MQ=255) tGAGTAACACCCAGTTTGGCCGGAAATCAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAg < 1:4455369/67‑1 (MQ=255) tGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACa < 1:10756597/66‑1 (MQ=255) tGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAgc < 1:16649546/68‑1 (MQ=255) tGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAg < 1:46913868/67‑1 (MQ=255) aGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAgcgc > 1:1358398/1‑68 (MQ=255) aGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAgcgc > 1:7664904/1‑68 (MQ=255) gTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCATTGCATGATTTGCAGCAACAgcgc < 1:20430680/67‑1 (MQ=255) tAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCaa > 1:12116146/1‑68 (MQ=255) aaCACCCAGTTTGGCCGGAAAACAATCAGGTTAtccggccaaactgggtgttactcatcttgttgt > 1:40886657‑M2/1‑33 (MQ=255) aaCACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAAt > 1:30313790/1‑68 (MQ=255) aaCACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAAt > 1:8725841/1‑68 (MQ=255) aaCACCCAGTGTGGCCCGAAAACAATCACGCAAcccggccaaactgggtgttactcatcttgttgta > 1:15426612‑M2/1‑33 (MQ=255) acacCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATg > 1:15852698/1‑68 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTAtccggccaaactgggtgttactcatcttgttgtattgg > 1:26119263‑M2/1‑30 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg > 1:11934720/1‑68 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg > 1:32820807/1‑68 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg > 1:47574957/1‑68 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg < 1:22032622/68‑1 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg > 1:48419521/1‑68 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg < 1:24810263/68‑1 (MQ=255) cccAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAgg > 1:50119422/1‑68 (MQ=255) ccAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGa > 1:3486764/1‑68 (MQ=255) ccAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGa > 1:36609738/1‑68 (MQ=255) tttGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAaga > 1:21068589/1‑68 (MQ=255) ttGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAagag < 1:7394393/68‑1 (MQ=255) gCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAagagag > 1:18692852/1‑67 (MQ=255) cGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGcc < 1:19241189/67‑1 (MQ=255) ggAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAg < 1:38223563/68‑1 (MQ=255) ggAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAg < 1:11253614/68‑1 (MQ=255) aaaCAATCAGGTTATCCGGCCAGGGCCTCCTGTGCAGCAACAGCGCAATGACGAAAGAGAGCCAGAt < 1:48038930/67‑1 (MQ=255) aaaCAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGAtt < 1:30723336/68‑1 (MQ=255) aaaCAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGAtt < 1:17101997/68‑1 (MQ=255) aaCAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTa < 1:50727749/68‑1 (MQ=255) aaTCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTAccc < 1:36148618/68‑1 (MQ=255) aTCAGGTTAtccggccaaactgggtgttactcatcttgttgtattggatcctggccttgcctcatcgc > 1:23035499‑M2/1‑9 (MQ=255) ggTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCg > 1:35746619/1‑67 (MQ=255) ggTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCg > 1:26746477/1‑67 (MQ=255) gTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGcct > 1:35370805/1‑65 (MQ=255) gTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGt > 1:46532383/1‑67 (MQ=255) gTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGt > 1:27939522/1‑67 (MQ=255) gTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGt > 1:29068282/1‑67 (MQ=255) gTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGt > 1:42608485/1‑67 (MQ=255) ttATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGt < 1:5403303/66‑1 (MQ=255) ttATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGt < 1:44802077/66‑1 (MQ=255) ttATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGt < 1:44171441/66‑1 (MQ=255) ttATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGt < 1:8044786/66‑1 (MQ=255) ttATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGt < 1:38588722/66‑1 (MQ=255) ttATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGTc < 1:17397001/67‑1 (MQ=255) ttATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGTc < 1:23482510/67‑1 (MQ=255) | GAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCT > CP009273/3392081‑3392215 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |