| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4047497 | 457 (0.740) | 52 (0.100) | 12/94 | NT | 11.5% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | CP009273 | = 4047517 | 415 (0.800) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
Only 100 of 204 total aligned reads displayed.
AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4047422‑4047497‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgggcaGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGC < CP009273/4047517‑4047453 AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:33735753/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC < 1:50553342/68‑1AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:31670762/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:42456407/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:25642144/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:42655604/1‑68 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCTAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:20809950/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCGACCGTTGATTCAAACAGTTCG > 1:49559239/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAACCAGTTCG > 1:11309363/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAACCAGTTCG > 1:1749193/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:27978085/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:45435548/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:2849225/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:243801/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:37605352/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:20221960/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:19310022/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:17789695/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:50662084/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:36790674/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:17049309/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:1010003/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:38554440/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:3304135/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:1886387/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:15103563/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGAGTCAACCAGTTCG > 1:43672923/1‑67 AGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCC > 1:20368131/1‑68 AGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCC > 1:48568306/1‑68 CGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGG > 1:29205043/1‑68 CGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGG > 1:39559025/1‑68 CGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGG > 1:31203186/1‑68 GTCGCCCAGCTGTCCGGTTGCATTTGCGGAGTACTCTCCGCAACCGTTGATTCAACCAGCTCGCCGGG < 1:48095794/68‑1 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:34184024/68‑1 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:29537883/68‑1 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:40484467/68‑1 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:20480128/68‑1 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGAAACCGTTGATTCAAACAGTTCGCCGGG < 1:47349101/68‑1 CGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGC > 1:26553709/1‑67 ACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCGCGGCGA > 1:27028034/1‑68 ACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGA > 1:11933381/1‑68 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGGCCGGCGAAATGT > 1:13993594/1‑68 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGT > 1:37324930/1‑68 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGT > 1:2202040/1‑68 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGT > 1:39215630/1‑68 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGT > 1:35859877/1‑68 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGT > 1:7579766/1‑68 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCAGCGATCTGT > 1:43530217/1‑68 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGGGGTGATGCAGGGTTTGCGCGGCGCACTGT > 1:12657600/1‑68 GCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTT > 1:27479124/1‑68 CGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGTACTGTTTGAATC > 1:32275303/1‑68 CGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATC > 1:10246632/1‑68 CGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATC > 1:8075504/1‑68 CGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATC > 1:19052558/1‑68 CGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATC > 1:49926098/1‑68 CGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATC > 1:47841883/1‑68 ACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGATCTGTTTGATTCGCCGGTTGGGG > 1:7122643/1‑68 ACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGG > 1:15862737/1‑68 ACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGG > 1:49968226/1‑68 ACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGG > 1:30496344/1‑68 ACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGG > 1:26275209/1‑68 CAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGA > 1:40745108/1‑68 CAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGA > 1:9126233/1‑68 CAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGA > 1:43697250/1‑68 CAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGA > 1:28759042/1‑68 TTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGATAG > 1:2531786/1‑68 TCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT > 1:12146694/1‑68 TCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT > 1:15303741/1‑68 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTA < 1:22646342/68‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTA < 1:45877582/68‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:36058156/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:8346791/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:13067083/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:14686364/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:45370754/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:25178124/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:5898952/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:51168220/67‑1 GCCGGGCAGGGAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT > 1:5123014/1‑66 GCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTAC < 1:21039760/68‑1 GCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTAC < 1:3010330/68‑1 GCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT > 1:36414490/1‑66 GCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT > 1:21905816/1‑66 GCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT > 1:25054557/1‑66 CCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACT > 1:26727757/1‑68 CCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACT > 1:26883925/1‑68 CCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACT > 1:6121293/1‑68 CGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACT < 1:23233433/67‑1 CGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACT < 1:44879705/67‑1 CGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACT < 1:672900/67‑1 GGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTC < 1:48318107/68‑1 GGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTC < 1:17631560/68‑1 GGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTC < 1:18184453/68‑1 GGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTC < 1:21834399/68‑1 GGGCAGGAAGTGTTGATGCAGGATTTGCCCGGCGAACTGTTTGACTCAACGGTTGCGGAGAGTACTTC < 1:34615406/68‑1 GCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGC > 1:50760573/1‑68 GCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCG < 1:30788480/67‑1 GCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCG < 1:23931129/67‑1 GCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCG < 1:8593547/67‑1 GCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCG < 1:26827297/67‑1 AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4047422‑4047497‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgggcaGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGC < CP009273/4047517‑4047453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |