| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4047497 | 457 (0.740) | 52 (0.100) | 12/94 | NT | 11.5% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | CP009273 | = 4047517 | 415 (0.800) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
Only 100 of 791 total aligned reads displayed.
GCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTG > CP009273/4047431‑4047564 | ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt < 1:20095715/68‑1 (MQ=255) ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt < 1:2345181/68‑1 (MQ=255) gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt > 1:25515203/1‑65 (MQ=255) gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt > 1:10112774/1‑65 (MQ=255) gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt > 1:33168171/1‑65 (MQ=255) gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt > 1:35954101/1‑65 (MQ=255) gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt > 1:39232206/1‑65 (MQ=255) gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTAGATTCAAAAATATCGCAGCGCAAATcat > 1:7557453/1‑66 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:8556751/68‑1 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:15395724/68‑1 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:46848303/68‑1 (MQ=255) cGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCa < 1:9173496/68‑1 (MQ=255) ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCaa < 1:26989054/68‑1 (MQ=255) ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCa > 1:888011/1‑67 (MQ=255) tGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAac > 1:27985582/1‑66 (MQ=255) tGCATTTGCGAAGTACTCTCCGCAACCGTTGAGTCAAACAGTTCGCCGGGCAAATCCTGAATCAac > 1:17534077/1‑66 (MQ=255) gCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACt < 1:30256047/68‑1 (MQ=255) gCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACt < 1:48230216/68‑1 (MQ=255) gCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACt < 1:3838008/68‑1 (MQ=255) cGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgc < 1:30788480‑M2/67‑4 (MQ=255) cGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgc < 1:21011326‑M2/67‑4 (MQ=255) aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccgg > 1:41829432‑M2/1‑61 (MQ=255) aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccg < 1:44879705‑M2/67‑7 (MQ=255) aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccg < 1:21327695‑M2/67‑7 (MQ=255) aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccg < 1:672900‑M2/67‑7 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcga > 1:43680722‑M1/1‑38 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg < 1:5898952‑M2/67‑10 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg < 1:22002378‑M2/67‑10 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCagcccggcg < 1:51163192‑M2/67‑10 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:11197409/68‑1 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:34914067/68‑1 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:31914595/68‑1 (MQ=255) tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcga > 1:48516325‑M1/1‑36 (MQ=255) tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc > 1:287500/1‑68 (MQ=255) tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc > 1:18391801/1‑68 (MQ=255) ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaact > 1:9677141‑M2/1‑55 (MQ=255) ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCGGAATCAACACTTCCtgcccggcgaact > 1:17808459‑M2/1‑55 (MQ=255) tcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCAt < 1:33609282/68‑1 (MQ=255) tcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCAt < 1:13553524/68‑1 (MQ=255) ccccAACCGGCGAATCAAACAGATCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgt > 1:7122643‑M2/1‑53 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgt > 1:11867006‑M2/1‑53 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgt > 1:49968226‑M2/1‑53 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc < 1:30516681/68‑1 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:5285081/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:1684993/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:46171074/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:21793081/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:18729351/1‑68 (MQ=255) gCAACCGTTGATTCAAACAGTTCGCCGGGCAggaagtgttgattgaggatttgcccggcgaactgttt > 1:121363‑M1/1‑31 (MQ=255) gCAACCGTTGATTCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgttt > 1:27479124‑M1/1‑31 (MQ=255) gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCa > 1:35489406/1‑67 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:22160104/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:16243763/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:8297932/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:43471704/67‑1 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAggatgtgttgattcaggatttgcccggcgaactgtttgaa > 1:22838820‑M1/1‑28 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:14050880/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:36975323/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:19205010/1‑68 (MQ=255) ccGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGtt < 1:26813096/68‑1 (MQ=255) cGTTGATTCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgtactgtttgaatc > 1:32275303‑M1/1‑26 (MQ=255) cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCTTTa > 1:39822176/1‑68 (MQ=255) gTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAg < 1:7870055/68‑1 (MQ=255) tGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGcc > 1:31014717/1‑68 (MQ=255) tGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGc < 1:15125596/67‑1 (MQ=255) gATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacg > 1:6071949‑M2/1‑42 (MQ=255) ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCCCCGTTAGCCAGc > 1:22615698/1‑68 (MQ=255) aCAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcgg > 1:26275209‑M1/1‑15 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:14671330/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:40499227/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:44533534/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:45678236/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:26674732/1‑68 (MQ=255) aCAGTGCGCCGCGCAAACCCTGCATCACCCCTTCCtgcccggcgaactgtttgaatcaacggttgcgg > 1:12657600‑M2/1‑35 (MQ=255) aGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggag > 1:15846171‑M1/1‑13 (MQ=255) aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt > 1:35780330/1‑68 (MQ=255) aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt > 1:29624650/1‑68 (MQ=255) aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt > 1:497305/1‑68 (MQ=255) ttCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt > 1:40868660/1‑68 (MQ=255) ttCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt > 1:24933654/1‑68 (MQ=255) tCGCCGGGCAAATCCTGAATCACCACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt < 1:3886370/67‑1 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg < 1:47719535/64‑1 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt < 1:47424492/67‑1 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt < 1:24419902/65‑1 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt < 1:42847227/65‑1 (MQ=255) ccGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCCCCGTTAGCCCGCGGCAGGTGtt > 1:10403738/2‑68 (MQ=255) cGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagt < 1:25178124‑M1/67‑59 (MQ=255) cGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagt < 1:13067083‑M1/67‑59 (MQ=255) cGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagt < 1:6423492‑M1/67‑59 (MQ=255) cGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagt < 1:2652007‑M1/67‑59 (MQ=255) cGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagt < 1:20537882‑M1/67‑59 (MQ=255) cGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGttt < 1:24010375/68‑1 (MQ=255) cGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGttt < 1:42273187/68‑1 (MQ=255) cGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGttt < 1:43958420/68‑1 (MQ=255) gCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagtac < 1:3010330‑M1/68‑61 (MQ=255) gCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagt > 1:36414490‑M1/1‑8 (MQ=255) ccGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtttt > 1:34485802/1‑67 (MQ=255) ccGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtttt > 1:45225074/1‑67 (MQ=255) gggCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCCCCGTTAGCCAGCGGCAGGTGTTTTCCa > 1:37506677/1‑68 (MQ=255) gCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagtacttcgc > 1:50760573‑M1/1‑3 (MQ=255) | GCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTG > CP009273/4047431‑4047564 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |