New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 4047497457 (0.740)52 (0.100) 12/94 NT 11.5% coding (1142/1410 nt) glnG fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein
?CP009273 = 4047517 415 (0.800)coding (1122/1410 nt) glnG fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein

Only 100 of 652 total aligned reads displayed.

GCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACG  >  CP009273/4047453‑4047584
                                                                |                                                                   
 cGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgc                                                                  <  1:26827297‑M2/67‑4 (MQ=255)
  gAAGTACTCTCCGCAACCGTTGAGTCAAACAGTTCGCCGGGCAAATCCTGCATCAACACTTCCtgccc                                                                <  1:34615406‑M2/68‑6 (MQ=255)
    aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccg                                                               <  1:44879705‑M2/67‑7 (MQ=255)
       aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:5898952‑M2/67‑10 (MQ=255)
       aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:51168220‑M2/67‑10 (MQ=255)
       aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:36058156‑M2/67‑10 (MQ=255)
       aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:2652007‑M2/67‑10 (MQ=255)
       aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:14686364‑M2/67‑10 (MQ=255)
       aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggc                                                             >  1:29759252‑M2/1‑58 (MQ=255)
       aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:48459053/68‑1 (MQ=255)
       aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:22515180/68‑1 (MQ=255)
       aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:31914595/68‑1 (MQ=255)
        ctctCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaa                                                          >  1:49803182‑M2/1‑57 (MQ=255)
        ctctCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCggcggc                                                          <  1:38186776/68‑1 (MQ=255)
        ctatCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaa                                                          >  1:2531786‑M2/1‑57 (MQ=255)
         tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCTAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         >  1:26695746/1‑68 (MQ=255)
         tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         >  1:18450827/1‑68 (MQ=255)
          ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaact                                                        >  1:15846171‑M2/1‑55 (MQ=255)
          ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa                                                        >  1:22124703/1‑68 (MQ=255)
           tcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactg                                                       >  1:9039410‑M2/1‑54 (MQ=255)
            ccccAACCGGCGAATCAAACAGATCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgt                                                      >  1:7122643‑M2/1‑53 (MQ=255)
            ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgt                                                      >  1:30496344‑M2/1‑53 (MQ=255)
            ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgt                                                      >  1:50485799‑M2/1‑53 (MQ=255)
            ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:30140146/1‑68 (MQ=255)
            ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:33208752/1‑68 (MQ=255)
            ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:38731254/1‑68 (MQ=255)
              gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCa                                                     >  1:35489406/1‑67 (MQ=255)
               cAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   >  1:10552889/1‑68 (MQ=255)
               cAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   >  1:18135914/1‑68 (MQ=255)
                aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:37867534/67‑1 (MQ=255)
                aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:47851225/67‑1 (MQ=255)
                aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:44086158/67‑1 (MQ=255)
                 aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:16962081/1‑68 (MQ=255)
                 aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:33575813/1‑68 (MQ=255)
                 aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:19205010/1‑68 (MQ=255)
                 aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:41763489/1‑68 (MQ=255)
                   cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCTTTa                                               >  1:39822176/1‑68 (MQ=255)
                   cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa                                               >  1:16623352/1‑68 (MQ=255)
                   cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa                                               >  1:6084100/1‑68 (MQ=255)
                   cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa                                               >  1:2006532/1‑68 (MQ=255)
                      tGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGc                                             <  1:25036621/67‑1 (MQ=255)
                      tGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGc                                             <  1:43817831/67‑1 (MQ=255)
                       gATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacg                                           >  1:8075504‑M2/1‑42 (MQ=255)
                         ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGc                                         >  1:32390547/1‑68 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggttgcgg                                    >  1:7579766‑M2/1‑35 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggttgcgg                                    >  1:37324930‑M2/1‑35 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:43539878/1‑68 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:44533534/1‑68 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:30816196/1‑68 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:40499227/1‑68 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:13848719/1‑68 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:6563952/1‑68 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:39239618/1‑68 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:15558877/1‑68 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:24549725/1‑68 (MQ=255)
                              aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCCGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:31074798/1‑68 (MQ=255)
                               cAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg                                   >  1:14273691/1‑68 (MQ=255)
                               cAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg                                   >  1:11445704/1‑68 (MQ=255)
                               cAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg                                   >  1:2425575/1‑68 (MQ=255)
                               cAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg                                   >  1:36512264/1‑68 (MQ=255)
                                aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCCCCGTTAGCCAGCGGCAGgt                                  >  1:13273122/1‑68 (MQ=255)
                                   tCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggttgcggagagt                               >  1:11933381‑M2/1‑30 (MQ=255)
                                   tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt                                <  1:21270101/67‑1 (MQ=255)
                                   tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt                                <  1:47424492/67‑1 (MQ=255)
                                   tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtt                               >  1:34927241/1‑68 (MQ=255)
                                      ccGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtttt                             >  1:9643856/1‑67 (MQ=255)
                                      ccGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtttt                             >  1:45763824/1‑67 (MQ=255)
                                      ccGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtttt                             >  1:45225074/1‑67 (MQ=255)
                                        gggCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggttgcggagagtacttc                          >  1:15144706‑M2/1‑25 (MQ=255)
                                            aaaTCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCt                       <  1:35850324/67‑1 (MQ=255)
                                            aaaTCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCt                       <  1:4308287/67‑1 (MQ=255)
                                             aaTCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTgg                     <  1:5398361/68‑1 (MQ=255)
                                                 cTGTATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCa                 <  1:12776308/68‑1 (MQ=255)
                                                 cTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCa                 <  1:27030007/68‑1 (MQ=255)
                                                 cTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCa                 <  1:21895632/68‑1 (MQ=255)
                                                  tGAATCAACACTTCCTGCCCTGCGGCCATCACCGTTAGCCTGCGGCAGGTGTTTTCCAGCTGGCGCa                 <  1:27988153/67‑1 (MQ=255)
                                                    aaTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGt              >  1:8743499/1‑68 (MQ=255)
                                                     aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCCGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:2756683/1‑68 (MQ=255)
                                                     aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:42472613/1‑68 (MQ=255)
                                                     aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:34277465/68‑1 (MQ=255)
                                                      tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:18897961/1‑67 (MQ=255)
                                                      tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:50824142/68‑1 (MQ=255)
                                                      tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:47600666/68‑1 (MQ=255)
                                                          cacTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:4680629/1‑68 (MQ=255)
                                                          cacTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:8380103/1‑68 (MQ=255)
                                                          cacTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:42131214/1‑68 (MQ=255)
                                                           acTTCCTGCCCGGCGGTCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:17447329/1‑67 (MQ=255)
                                                              tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCa    <  1:40880453/68‑1 (MQ=255)
                                                               ccTGCCCGGCGGCCATCCCCGTTACCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc   <  1:21458078/68‑1 (MQ=255)
                                                               ccTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc   <  1:6334661/68‑1 (MQ=255)
                                                               ccTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc   >  1:25645079/1‑68 (MQ=255)
                                                               ccTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc   <  1:46240474/68‑1 (MQ=255)
                                                               ccTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc   <  1:28797548/68‑1 (MQ=255)
                                                               ccTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGATGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc   <  1:20687081/68‑1 (MQ=255)
                                                                cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc   >  1:12298784/1‑67 (MQ=255)
                                                                cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:26225010/68‑1 (MQ=255)
                                                                cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:2280331/68‑1 (MQ=255)
                                                                cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:23396192/68‑1 (MQ=255)
                                                                cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:10137049/68‑1 (MQ=255)
                                                                cTGCCCGGCGGCCATCACCGTTACCCAGCGGCAGGTGTTTTACAGCTGGCGCACGTTGCCTGGCCAc   >  1:29381713/1‑67 (MQ=39)
                                                                |                                                                   
GCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACG  >  CP009273/4047453‑4047584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.