New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 108768 =460 (0.740)25 (0.050) 8/100 NT 5.7% coding (319/744 nt) zapD FtsZ stabilizer
?CP009273 108799 = 417 (0.750)coding (288/744 nt) zapD FtsZ stabilizer

GTGGACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/108840‑108768
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgcTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTGG  >  CP009273/108799‑108865
                                                                                                                                            
GTGGACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGC                                                                          >  1:43412699/1‑68
GTGGACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGC                                                                          >  1:49236623/1‑68
GTGGACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGC                                                                          <  1:37259049/68‑1
GTGGACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGC                                                                          >  1:6093635/1‑68
    ACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCG                                                                      >  1:27623658/1‑68
    ACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCC                                                                       >  1:28492443/1‑67
    ACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCC                                                                       >  1:4568890/1‑67
    ACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCC                                                                       >  1:19304/1‑67
    ACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCC                                                                       <  1:48786164/67‑1
    ACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCC                                                                       <  1:3212848/67‑1
    ACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCC                                                                       <  1:45165275/67‑1
    ACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCC                                                                       <  1:25470858/67‑1
    ACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCC                                                                       <  1:21178289/67‑1
    ACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCC                                                                       <  1:48728625/67‑1
    ACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCC                                                                       >  1:4673401/1‑67
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:23016150/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     <  1:34577486/68‑1
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:50728078/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:2268046/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:32241145/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:27419391/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:2899727/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     <  1:29766220/68‑1
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     <  1:47647309/68‑1
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:10848126/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:31473729/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:31686191/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:16791539/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:44206057/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     <  1:7803706/68‑1
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:13058982/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:13501735/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:7205077/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:16225413/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:5109170/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:1808326/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     >  1:22780859/1‑68
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCG                                                                      <  1:35747126/67‑1
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCG                                                                      <  1:36922959/67‑1
     CCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCG                                                                      <  1:72730/67‑1
     CCAGAGCCGGATTGAAGCAAAAATTCAGCAGTTAAAACCGGCGGGGAGCGTATTAATTTCCGCGCCGC                                                                     <  1:24840663/68‑1
             GTATTGAAGCATTAATTCAGCAGTTAAACGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACT                                                             <  1:50094291/68‑1
                  GAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGA                                                        <  1:13629773/68‑1
                  GAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGA                                                        <  1:21647388/68‑1
                  GAAGCAATAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGA                                                        <  1:50461786/68‑1
                   AAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGA                                                        <  1:35149689/67‑1
                    AGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGAA                                                       <  1:14743654/67‑1
                        TTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTAAACTGCTGAATTAAT                                                  <  1:38149804/68‑1
                           cTTCATCAGTTAAAACCGGCGGGCAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGAATTAATGCT                                               <  1:15467587/67‑1
                           aaTCAGCAGTTAACAGCGGCGGGGAGCGTATAAATTTCCGCGCCGCTTTTAACTGCTGAATTAATGCT                                               <  1:5382711/66‑1
                           ATTCAGCAGTTAAACGCGGCGGGGAGCGTATTAATATCCGCGCCGCTTTTAACTGCTGAATTAATGCT                                               <  1:1126191/68‑1
                           ATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGAATTAATGCT                                               <  1:13016972/68‑1
                           ATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGAATTAATGCT                                               <  1:39296450/68‑1
                           ATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGAATTAATGCT                                               <  1:1574952/68‑1
                           ATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGAATTAATGCT                                               <  1:4713261/68‑1
                           ATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGAATTAATGCT                                               <  1:34113833/68‑1
                           ATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGAATTAATGCT                                               <  1:21125630/68‑1
                           ATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGAATTAATGCT                                               <  1:2303262/68‑1
                           ATTCAGCAGTAAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGAATTAATGCT                                               <  1:27308114/68‑1
                           ATTCACCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGAATTAATGCT                                               <  1:14457829/68‑1
                              cccCAGGTAAAAGCGGCGGGGAGCGTATTAATTTCCGCCCCGCTTTTAACTGCTGAATTAATGCTTCA                                            <  1:18759807/65‑1
                              CAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGAATTAATGCTTCA                                            <  1:32122/68‑1
                                cCAGTAAAACCCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGAATTAATGCTTCAAT                                          <  1:14797737/67‑1
                                     aAAACGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGC                                     <  1:25349363/67‑1
                                     aAAACGCGGCGGGGAGCGTATTAATTTCCGCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGC                                     <  1:33755185/67‑1
                                     TAAACGCGGCGGGGAGCGTATTAATTCCCGCGCCGCTTTTAACTGCTCAATTAATGCTTCAATACGGC                                     <  1:25868293/68‑1
                                                                   gGCCGCTTTTAACTGCTGAATTAATGCATCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       <  1:50536615/67‑1
                                                                   CGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       <  1:46098766/68‑1
                                                                   CGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       <  1:6099205/68‑1
                                                                   CGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       <  1:3117122/68‑1
                                                                   CGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       <  1:37887617/68‑1
                                                                   CGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       <  1:135101/68‑1
                                                                   CGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       <  1:14012207/68‑1
                                                                   CGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       <  1:24074660/68‑1
                                                                   CGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       <  1:2692299/68‑1
                                                                   CGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       <  1:44266476/68‑1
                                                                    GCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGT      <  1:8234002/68‑1
                                                                    GCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGT      <  1:23709973/68‑1
                                                                    GCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGT      <  1:29852012/68‑1
                                                                    GCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       >  1:49268286/1‑67
                                                                    GCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       >  1:12914816/1‑67
                                                                    GCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       >  1:22904274/1‑67
                                                                    GCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       >  1:36178499/1‑67
                                                                     CCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCCCGCCAGGCACGCCAATCCAGG       >  1:45642861/1‑66
                                                                     CCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       >  1:2431713/1‑66
                                                                     CCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       >  1:30051471/1‑66
                                                                     CCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       >  1:35573779/1‑66
                                                                     CCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGG       >  1:44912778/1‑66
                                                                       GCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTG   >  1:26803629/1‑68
                                                                       GCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTG   >  1:49096944/1‑68
                                                                       GCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTG   >  1:24760491/1‑68
                                                                       GCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTG   >  1:21213131/1‑68
                                                                       GCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTG   >  1:20954242/1‑68
                                                                       GCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTG   >  1:16814924/1‑68
                                                                       GCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTG   >  1:6617488/1‑68
                                                                       GCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTG   >  1:36375037/1‑68
                                                                       GCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGTCTGG  >  1:34107597/1‑68
                                                                                                                                            
GTGGACCAGAGCCGTATTGAAGCATTAATTCAGCAGTTAAAAGCGGCGGGGAGCGTATTAATTTCCGCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/108840‑108768
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgcTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTGG  >  CP009273/108799‑108865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.